RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 LIG4P49917 911 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 FANCCQ00597 558 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 TLE2Q04725 743 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 FAAP100Q0VG06 881 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 PRPF4BQ13523 1007 aaKnown RBP12.01□□□□□ -0.49
SCN9A-205ENST00000454569 KCNJ12Q14500 433 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 KRT31Q15323 416 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 NFIL3Q16649 462 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 TCP11X2Q5H9J9 407 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 CEP135Q66GS9 1140 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 ARMCX5Q6P1M9 558 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 FOXR2Q6PJQ5 311 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 FILIP1Q7Z7B0 1213 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 CBWD2Q8IUF1 395 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 C12orf56Q8IXR9 622 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 TMEM192Q8IY95 271 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 GCOM2Q9BZD3 368 aaPredicted RBP12.01□□□□□ -0.49
SCN9A-205ENST00000454569 CXCL16Q9H2A7 254 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 PDZD7Q9H5P4 517 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 TAB2Q9NYJ8 693 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 ANKFY1Q9P2R3 1169 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 KCNG1Q9UIX4 513 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 EXOC7Q9UPT5 735 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 NOD1Q9Y239 953 aa12.01□□□□□ -0.49
SCN9A-205ENST00000454569 A0A0B4J269 797 aa12□□□□□ -0.49
SCN9A-205ENST00000454569 CETN3O15182 167 aa12□□□□□ -0.49
SCN9A-205ENST00000454569 TEX33O43247 280 aa12□□□□□ -0.49
SCN9A-205ENST00000454569 C7P10643 843 aa12□□□□□ -0.49
SCN9A-205ENST00000454569 HARSP12081 509 aaKnown RBP12□□□□□ -0.49
SCN9A-205ENST00000454569 DLG4P78352 724 aa12□□□□□ -0.49
SCN9A-205ENST00000454569 LPIN1Q14693 890 aa12□□□□□ -0.49
SCN9A-205ENST00000454569 FAM26DQ5JW98 314 aa12□□□□□ -0.49
SCN9A-205ENST00000454569 MIIPQ5JXC2 388 aa12□□□□□ -0.49
SCN9A-205ENST00000454569 COL13A1Q5TAT6 717 aaPredicted RBP12□□□□□ -0.49
SCN9A-205ENST00000454569 ATF7IP2Q5U623 682 aa12□□□□□ -0.49
SCN9A-205ENST00000454569 TSHZ1Q6ZSZ6 1077 aa12□□□□□ -0.49
SCN9A-205ENST00000454569 HS2ST1Q7LGA3 356 aa12□□□□□ -0.49
SCN9A-205ENST00000454569 SLC9A9Q8IVB4 645 aa12□□□□□ -0.49
SCN9A-205ENST00000454569 NOC3LQ8WTT2 800 aaKnown RBP12□□□□□ -0.49
SCN9A-205ENST00000454569 POMGNT1Q8WZA1 660 aa12□□□□□ -0.49
SCN9A-205ENST00000454569 ANP32BQ92688 251 aaKnown RBP12□□□□□ -0.49
SCN9A-205ENST00000454569 EIF2AQ9BY44 585 aaKnown RBP12□□□□□ -0.49
SCN9A-205ENST00000454569 MRPL4Q9BYD3 311 aaKnown RBP12□□□□□ -0.49
SCN9A-205ENST00000454569 VPS16Q9H269 839 aa12□□□□□ -0.49
SCN9A-205ENST00000454569 C11orf49Q9H6J7 331 aa12□□□□□ -0.49
SCN9A-205ENST00000454569 PRMT7Q9NVM4 692 aaPredicted RBP12□□□□□ -0.49
SCN9A-205ENST00000454569 IFNKQ9P0W0 207 aa12□□□□□ -0.49
SCN9A-205ENST00000454569 LIMA1Q9UHB6 759 aaKnown RBP12□□□□□ -0.49
SCN9A-205ENST00000454569 GHRP10912 638 aa11.99□□□□□ -0.49
SCN9A-205ENST00000454569 CDK11BP21127 795 aaKnown RBP11.99□□□□□ -0.49
SCN9A-205ENST00000454569 ACOT2P49753 483 aa11.99□□□□□ -0.49
SCN9A-205ENST00000454569 TCTN1Q2MV58 587 aa11.99□□□□□ -0.49
SCN9A-205ENST00000454569 FBXO47Q5MNV8 452 aa11.99□□□□□ -0.49
SCN9A-205ENST00000454569 C1orf220Q5T0J3 134 aa11.99□□□□□ -0.49
SCN9A-205ENST00000454569 SCARA3Q6AZY7 606 aa11.99□□□□□ -0.49
SCN9A-205ENST00000454569 ZPBP2Q6X784 338 aa11.99□□□□□ -0.49
SCN9A-205ENST00000454569 CATSPER4Q7RTX7 472 aa11.99□□□□□ -0.49
SCN9A-205ENST00000454569 ANKRD33Q7Z3H0 272 aa11.99□□□□□ -0.49
SCN9A-205ENST00000454569 UBE2Q1Q7Z7E8 422 aa11.99□□□□□ -0.49
SCN9A-205ENST00000454569 TMEM130Q8N3G9 435 aa11.99□□□□□ -0.49
SCN9A-205ENST00000454569 CCDC155Q8N6L0 562 aa11.99□□□□□ -0.49
SCN9A-205ENST00000454569 ANKLE1Q8NAG6 615 aa11.99□□□□□ -0.49
SCN9A-205ENST00000454569 CEP63Q96MT8 703 aa11.99□□□□□ -0.49
SCN9A-205ENST00000454569 FAM213AQ9BRX8 229 aa11.99□□□□□ -0.49
SCN9A-205ENST00000454569 XPO4Q9C0E2 1151 aaKnown RBP11.99□□□□□ -0.49
SCN9A-205ENST00000454569 CDT1Q9H211 546 aa11.99□□□□□ -0.49
SCN9A-205ENST00000454569 ST3GAL5Q9UNP4 418 aa11.99□□□□□ -0.49
SCN9A-205ENST00000454569 TNFSF13BQ9Y275 285 aa11.99□□□□□ -0.49
SCN9A-205ENST00000454569 ATP11BQ9Y2G3 1177 aa11.99□□□□□ -0.49
SCN9A-205ENST00000454569 CNTNAP2Q9UHC6 1331 aa11.99□□□□□ -0.49
SCN9A-205ENST00000454569 A0A1B0GUA9 196 aa11.98□□□□□ -0.49
SCN9A-205ENST00000454569 LRRC10BA6NIK2 292 aa11.98□□□□□ -0.49
SCN9A-205ENST00000454569 MGEA5O60502 916 aa11.98□□□□□ -0.49
SCN9A-205ENST00000454569 EXOC3O60645 756 aa11.98□□□□□ -0.49
SCN9A-205ENST00000454569 TOM1L1O75674 476 aa11.98□□□□□ -0.49
SCN9A-205ENST00000454569 GARTP22102 1010 aa11.98□□□□□ -0.49
SCN9A-205ENST00000454569 ITGB8P26012 769 aa11.98□□□□□ -0.49
SCN9A-205ENST00000454569 CD52P31358 61 aa11.98□□□□□ -0.49
SCN9A-205ENST00000454569 COPB1P53618 953 aaKnown RBP11.98□□□□□ -0.49
SCN9A-205ENST00000454569 OSTNP61366 133 aa11.98□□□□□ -0.49
SCN9A-205ENST00000454569 MCL1Q07820 350 aa11.98□□□□□ -0.49
SCN9A-205ENST00000454569 UBXN11Q5T124 520 aa11.98□□□□□ -0.49
SCN9A-205ENST00000454569 TRIM59Q8IWR1 403 aa11.98□□□□□ -0.49
SCN9A-205ENST00000454569 XXYLT1Q8NBI6 393 aa11.98□□□□□ -0.49
SCN9A-205ENST00000454569 TMEM174Q8WUU8 243 aa11.98□□□□□ -0.49
SCN9A-205ENST00000454569 FBXL18Q96ME1 805 aa11.98□□□□□ -0.49
SCN9A-205ENST00000454569 POP1Q99575 1024 aaKnown RBP11.98□□□□□ -0.49
SCN9A-205ENST00000454569 TUBGCP2Q9BSJ2 902 aa11.98□□□□□ -0.49
SCN9A-205ENST00000454569 TCHPQ9BT92 498 aa11.98□□□□□ -0.49
SCN9A-205ENST00000454569 TMX1Q9H3N1 280 aa11.98□□□□□ -0.49
SCN9A-205ENST00000454569 KDM4CQ9H3R0 1056 aa11.98□□□□□ -0.49
SCN9A-205ENST00000454569 AGO2Q9UKV8 859 aaKnown RBP11.98□□□□□ -0.49
SCN9A-205ENST00000454569 CLDN3O15551 220 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 NBNO60934 754 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 LRRN2O75325 713 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 ERLIN2O94905 339 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 ADCY5O95622 1261 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 TRIM49P0CI25 452 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 TRIM49CP0CI26 452 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 RPL13P26373 211 aaKnown RBP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms