RNA–Protein interactions for RNA: ENST00000451716.5

COL27A1-202, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 2,865 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-202ENST00000451716 CNTN2Q02246 1040 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 ZNF211Q13398 564 aaPredicted RBP13.02□□□□□ -0.33
COL27A1-202ENST00000451716 MTERF2Q49AM1 385 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 CATSPERGQ6ZRH7 1159 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 SLC47A2Q86VL8 602 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 PBKQ96KB5 322 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 PCDHB18PQ96TA0 734 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 ST6GALNAC4Q9H4F1 302 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 XPNPEP1Q9NQW7 623 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 INTUQ9ULD6 942 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 NR2E1Q9Y466 385 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 SPDYE16A6NNV3 312 aaPredicted RBP13.02□□□□□ -0.33
COL27A1-202ENST00000451716 PGRMC1O00264 195 aaKnown RBP13.02□□□□□ -0.33
COL27A1-202ENST00000451716 HNRNPDLO14979 420 aaKnown RBP13.02□□□□□ -0.33
COL27A1-202ENST00000451716 SART1O43290 800 aaKnown RBP13.02□□□□□ -0.33
COL27A1-202ENST00000451716 TNNC1P63316 161 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 LMBRD2Q68DH5 695 aaPredicted RBP13.02□□□□□ -0.33
COL27A1-202ENST00000451716 OTUD6AQ7L8S5 288 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 MAP4K3Q8IVH8 894 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 TAS1R2Q8TE23 839 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 PARD3BQ8TEW8 1205 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 SCFD2Q8WU76 684 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 PPM1EQ8WY54 764 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 DHX38Q92620 1227 aaKnown RBP13.02□□□□□ -0.33
COL27A1-202ENST00000451716 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.02□□□□□ -0.339e-19■■□□□ 13.6
COL27A1-202ENST00000451716 PI4K2AQ9BTU6 479 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 SUCLA2Q9P2R7 463 aaPredicted RBP13.02□□□□□ -0.33
COL27A1-202ENST00000451716 SLC9A2Q9UBY0 812 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 AMACRQ9UHK6 382 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 AMFRQ9UKV5 643 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 ADAMTS5Q9UNA0 930 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 RLFQ13129 1914 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 FDX1P10109 184 aa13.01□□□□□ -0.33
COL27A1-202ENST00000451716 ERVK-9P63128 1117 aa13.01□□□□□ -0.33
COL27A1-202ENST00000451716 DCAF12L1Q5VU92 463 aa13.01□□□□□ -0.33
COL27A1-202ENST00000451716 AADACL2Q6P093 401 aa13.01□□□□□ -0.33
COL27A1-202ENST00000451716 EMBQ6PCB8 327 aa13.01□□□□□ -0.33
COL27A1-202ENST00000451716 NOP9Q86U38 636 aaKnown RBP13.01□□□□□ -0.33
COL27A1-202ENST00000451716 SAMD3Q8N6K7 520 aa13.01□□□□□ -0.33
COL27A1-202ENST00000451716 ACTRT1Q8TDG2 376 aa13.01□□□□□ -0.33
COL27A1-202ENST00000451716 TATDN2Q93075 761 aa13.01□□□□□ -0.33
COL27A1-202ENST00000451716 HES6Q96HZ4 224 aa13.01□□□□□ -0.33
COL27A1-202ENST00000451716 ACAD9Q9H845 621 aa13.01□□□□□ -0.33
COL27A1-202ENST00000451716 TMOD4Q9NZQ9 345 aa13.01□□□□□ -0.33
COL27A1-202ENST00000451716 BRCA1P38398 1863 aaKnown RBP13.01□□□□□ -0.33
COL27A1-202ENST00000451716 DOCK1Q14185 1865 aa13.01□□□□□ -0.33
COL27A1-202ENST00000451716 FGGP02679 453 aa13.01□□□□□ -0.33
COL27A1-202ENST00000451716 IRX1P78414 480 aaPredicted RBP13.01□□□□□ -0.33
COL27A1-202ENST00000451716 PPATQ06203 517 aa13.01□□□□□ -0.33
COL27A1-202ENST00000451716 HLTFQ14527 1009 aaKnown RBP eCLIP13.01□□□□□ -0.332e-7■□□□□ 9
COL27A1-202ENST00000451716 SYCE1Q8N0S2 351 aa13.01□□□□□ -0.33
COL27A1-202ENST00000451716 KLHL23Q8NBE8 558 aa13.01□□□□□ -0.33
COL27A1-202ENST00000451716 ATP6V0A1Q93050 837 aa13.01□□□□□ -0.33
COL27A1-202ENST00000451716 TMEM143Q96AN5 459 aa13.01□□□□□ -0.33
COL27A1-202ENST00000451716 BICD1Q96G01 975 aa13.01□□□□□ -0.33
COL27A1-202ENST00000451716 IWS1Q96ST2 819 aa13.01□□□□□ -0.33
COL27A1-202ENST00000451716 FAM213AQ9BRX8 229 aa13.01□□□□□ -0.33
COL27A1-202ENST00000451716 CELF4Q9BZC1 486 aaKnown RBP13.01□□□□□ -0.33
COL27A1-202ENST00000451716 EXOC7Q9UPT5 735 aa13.01□□□□□ -0.33
COL27A1-202ENST00000451716 PARP14Q460N5 1801 aa13.01□□□□□ -0.33
COL27A1-202ENST00000451716 NCANO14594 1321 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 ANKRD62A6NC57 917 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 ECEL1O95672 775 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 PSAPP07602 524 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 TREML2Q5T2D2 321 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 AP1ARQ63HQ0 302 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 SEPT14Q6ZU15 432 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 APOBEC3FQ8IUX4 373 aaKnown RBP13□□□□□ -0.33
COL27A1-202ENST00000451716 AFAP1L1Q8TED9 768 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 TIPINQ9BVW5 301 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 CYP26B1Q9NR63 512 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 CTTNBP2NLQ9P2B4 639 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 C19orf81C9J6K1 198 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 KRT14P02533 472 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 MMEP08473 750 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 CHRNB2P17787 502 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 PAK2Q13177 524 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 TAS1R3Q7RTX0 852 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 CPNE8Q86YQ8 564 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 EPS8L1Q8TE68 723 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 RUBCNQ92622 972 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 KIFAP3Q92845 792 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 ARL8AQ96BM9 186 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 BTBD6Q96KE9 485 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 POLR3FQ9H1D9 316 aaPredicted RBP13□□□□□ -0.33
COL27A1-202ENST00000451716 GPRC5DQ9NZD1 345 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 POLR2AP24928 1970 aaKnown RBP13□□□□□ -0.33
COL27A1-202ENST00000451716 PHIPQ8WWQ0 1821 aa13□□□□□ -0.33
COL27A1-202ENST00000451716 CES2O00748 559 aa12.99□□□□□ -0.33
COL27A1-202ENST00000451716 P4HA2O15460 535 aa12.99□□□□□ -0.33
COL27A1-202ENST00000451716 DDX3YO15523 660 aaKnown RBP12.99□□□□□ -0.33
COL27A1-202ENST00000451716 SKIDA1Q1XH10 827 aa12.99□□□□□ -0.33
COL27A1-202ENST00000451716 KRT39Q6A163 491 aa12.99□□□□□ -0.33
COL27A1-202ENST00000451716 XRRA1Q6P2D8 792 aa12.99□□□□□ -0.33
COL27A1-202ENST00000451716 ABHD15Q6UXT9 468 aa12.99□□□□□ -0.33
COL27A1-202ENST00000451716 SV2AQ7L0J3 742 aa12.99□□□□□ -0.33
COL27A1-202ENST00000451716 ALG3Q92685 438 aa12.99□□□□□ -0.33
COL27A1-202ENST00000451716 CAVIN3Q969G5 261 aa12.99□□□□□ -0.33
COL27A1-202ENST00000451716 MIEF2Q96C03 454 aa12.99□□□□□ -0.33
COL27A1-202ENST00000451716 C12orf42Q96LP6 360 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms