RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 GOLGA8MH3BSY2 632 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 CES2O00748 559 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 HOXD13P35453 343 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 PODNQ7Z5L7 613 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 NLRX1Q86UT6 975 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 CPNE8Q86YQ8 564 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 MKNK1Q9BUB5 465 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 OLFML3Q9NRN5 406 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 TOPORSQ9NS56 1045 aaPredicted RBP12.7□□□□□ -0.38
MSH6-204ENST00000445503 PCDHB4Q9Y5E5 795 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 RASA4BC9J798 803 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 RASA4O43374 803 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 SCP2P22307 547 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 LIG4P49917 911 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 PPP3CAQ08209 521 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 ZNF394Q53GI3 561 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 TATDN2Q93075 761 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 ZKSCAN4Q969J2 545 aaPredicted RBP12.7□□□□□ -0.38
MSH6-204ENST00000445503 AGBL1Q96MI9 1066 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 TGS1Q96RS0 853 aaKnown RBP12.7□□□□□ -0.38
MSH6-204ENST00000445503 IWS1Q96ST2 819 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 PITPNM3Q9BZ71 974 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 IMPG2Q9BZV3 1241 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 SIX2Q9NPC8 291 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 COG5Q9UP83 839 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 IKBKGQ9Y6K9 419 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 TCRBV7S2A1N4TA0A589 114 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 KIAA0391O15091 583 aaKnown RBP12.7□□□□□ -0.38
MSH6-204ENST00000445503 CD58P19256 250 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 ALDH3A1P30838 453 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 ARHGEF16Q5VV41 709 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 C1orf186Q6ZWK4 172 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 PRELID2Q8N945 189 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 GRK7Q8WTQ7 553 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 PWWP2AQ96N64 755 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 WDR18Q9BV38 432 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 RAVER2Q9HCJ3 691 aaKnown RBP12.7□□□□□ -0.38
MSH6-204ENST00000445503 SAYSD1Q9NPB0 183 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 EXOC1LA0A1B0GW35 172 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 RARAP10276 462 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 PCK1P35558 622 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 PEX19P40855 299 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 SESN3P58005 492 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 DDR1Q08345 913 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 LARGE2Q8N3Y3 721 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 LRRC4BQ9NT99 713 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 CTNNAL1Q9UBT7 734 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 SUGT1Q9Y2Z0 365 aa12.7□□□□□ -0.38
MSH6-204ENST00000445503 P4HBP07237 508 aaKnown RBP12.69□□□□□ -0.38
MSH6-204ENST00000445503 PIK3CAP42336 1068 aa12.69□□□□□ -0.38
MSH6-204ENST00000445503 QARSP47897 775 aaKnown RBP12.69□□□□□ -0.38
MSH6-204ENST00000445503 MTMR1Q13613 665 aa12.69□□□□□ -0.38
MSH6-204ENST00000445503 MOXD1Q6UVY6 613 aa12.69□□□□□ -0.38
MSH6-204ENST00000445503 NOD2Q9HC29 1040 aa12.69□□□□□ -0.38
MSH6-204ENST00000445503 USP20Q9Y2K6 914 aa12.69□□□□□ -0.38
MSH6-204ENST00000445503 GTPBP10A4D1E9 387 aaKnown RBP12.69□□□□□ -0.38
MSH6-204ENST00000445503 UBOX5O94941 541 aa12.69□□□□□ -0.38
MSH6-204ENST00000445503 DRD4P21917 467 aa12.69□□□□□ -0.38
MSH6-204ENST00000445503 ITGA8P53708 1063 aa12.69□□□□□ -0.38
MSH6-204ENST00000445503 DAB2IPQ5VWQ8 1189 aa12.69□□□□□ -0.38
MSH6-204ENST00000445503 KRT39Q6A163 491 aa12.69□□□□□ -0.38
MSH6-204ENST00000445503 NLGN1Q8N2Q7 840 aa12.69□□□□□ -0.38
MSH6-204ENST00000445503 TMEM117Q9H0C3 514 aa12.69□□□□□ -0.38
MSH6-204ENST00000445503 CDC42EP4Q9H3Q1 356 aaKnown RBP12.69□□□□□ -0.38
MSH6-204ENST00000445503 L3MBTL1Q9Y468 752 aa12.69□□□□□ -0.38
MSH6-204ENST00000445503 PFASO15067 1338 aa12.69□□□□□ -0.38
MSH6-204ENST00000445503 BTNL10A8MVZ5 291 aa12.69□□□□□ -0.38
MSH6-204ENST00000445503 CD19P15391 556 aa12.69□□□□□ -0.38
MSH6-204ENST00000445503 SOX10P56693 466 aa12.69□□□□□ -0.38
MSH6-204ENST00000445503 IL9RQ01113 521 aa12.69□□□□□ -0.38
MSH6-204ENST00000445503 VPS72Q15906 364 aa12.69□□□□□ -0.38
MSH6-204ENST00000445503 SNRNP35Q16560 246 aaKnown RBP12.69□□□□□ -0.38
MSH6-204ENST00000445503 DUPD1Q68J44 220 aa12.69□□□□□ -0.38
MSH6-204ENST00000445503 MAIP1Q8WWC4 291 aa12.69□□□□□ -0.38
MSH6-204ENST00000445503 PRMT6Q96LA8 375 aaPredicted RBP12.69□□□□□ -0.38
MSH6-204ENST00000445503 P2RX7Q99572 595 aaKnown RBP12.69□□□□□ -0.38
MSH6-204ENST00000445503 CYP3A7-CYP3A51PA0A087WV96 503 aa12.68□□□□□ -0.38
MSH6-204ENST00000445503 LRRIQ4A6NIV6 560 aa12.68□□□□□ -0.38
MSH6-204ENST00000445503 H0Y3Z8 333 aa12.68□□□□□ -0.38
MSH6-204ENST00000445503 DDX3YO15523 660 aaKnown RBP12.68□□□□□ -0.38
MSH6-204ENST00000445503 CYP3A7P24462 503 aa12.68□□□□□ -0.38
MSH6-204ENST00000445503 POLD1P28340 1107 aa12.68□□□□□ -0.38
MSH6-204ENST00000445503 ELF1P32519 619 aa12.68□□□□□ -0.38
MSH6-204ENST00000445503 STRN3Q13033 797 aa12.68□□□□□ -0.38
MSH6-204ENST00000445503 ARHGEF18Q6ZSZ5 1173 aa12.68□□□□□ -0.38
MSH6-204ENST00000445503 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.68□□□□□ -0.38
MSH6-204ENST00000445503 ZNF341Q9BYN7 854 aa12.68□□□□□ -0.38
MSH6-204ENST00000445503 ABCF3Q9NUQ8 709 aa12.68□□□□□ -0.38
MSH6-204ENST00000445503 SEPT9Q9UHD8 586 aaPredicted RBP12.68□□□□□ -0.38
MSH6-204ENST00000445503 USP15Q9Y4E8 981 aaPredicted RBP12.68□□□□□ -0.38
MSH6-204ENST00000445503 CACNA1SQ13698 1873 aa12.68□□□□□ -0.38
MSH6-204ENST00000445503 PPFIA2O75334 1257 aa12.68□□□□□ -0.38
MSH6-204ENST00000445503 ADRA2BP18089 450 aa12.68□□□□□ -0.38
MSH6-204ENST00000445503 CA4P22748 312 aa12.68□□□□□ -0.38
MSH6-204ENST00000445503 BRDTQ58F21 947 aaPredicted RBP12.68□□□□□ -0.38
MSH6-204ENST00000445503 NOP9Q86U38 636 aaKnown RBP12.68□□□□□ -0.38
MSH6-204ENST00000445503 ETNK1Q9HBU6 452 aa12.68□□□□□ -0.38
MSH6-204ENST00000445503 LRRC4CQ9HCJ2 640 aa12.68□□□□□ -0.38
MSH6-204ENST00000445503 RAB20Q9NX57 234 aa12.68□□□□□ -0.38
MSH6-204ENST00000445503 UBR2Q8IWV8 1755 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms