RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 RHPN2Q8IUC4 686 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 HHIPL1Q96JK4 782 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 NLRP4Q96MN2 994 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 ADPGKQ9BRR6 497 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 TARS2Q9BW92 718 aaKnown RBP6.52□□□□□ -1.37
VPS50-205ENST00000441602 TMEM117Q9H0C3 514 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 SIX2Q9NPC8 291 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 AKT3Q9Y243 479 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 Q9Y3F1 56 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 TLL2Q9Y6L7 1015 aa6.52□□□□□ -1.37
VPS50-205ENST00000441602 MACROD2A1Z1Q3 448 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 CTAGE15A4D2H0 777 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 F8VZ95 297 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 ACKR2O00590 384 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 TLR2O60603 784 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 IL18RAPO95256 599 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 CTAGE8P0CG41 777 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 GNAT1P11488 350 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 HARSP12081 509 aaKnown RBP6.51□□□□□ -1.37
VPS50-205ENST00000441602 INSRRP14616 1297 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 TCP1P17987 556 aaKnown RBP6.51□□□□□ -1.37
VPS50-205ENST00000441602 TBXAS1P24557 533 aaPredicted RBP6.51□□□□□ -1.37
VPS50-205ENST00000441602 CPT1AP50416 773 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 GPC3P51654 580 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 JAM2P57087 298 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 IGBP1P78318 339 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 POU5F1Q01860 360 aaKnown RBP6.51□□□□□ -1.37
VPS50-205ENST00000441602 MAP2K1Q02750 393 aaPredicted RBP6.51□□□□□ -1.37
VPS50-205ENST00000441602 NAB2Q15742 525 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 CST9Q5W186 159 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 ALKBH5Q6P6C2 394 aaKnown RBP6.51□□□□□ -1.37
VPS50-205ENST00000441602 MPZL3Q6UWV2 235 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 CTAGE6Q86UF2 777 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 TRIM50Q86XT4 487 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 BRSK2Q8IWQ3 736 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 CTAGE4Q8IX94 777 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 SYCE1Q8N0S2 351 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 PPM1KQ8N3J5 372 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 PDCL2Q8N4E4 241 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 U2AF1L4Q8WU68 220 aaKnown RBP6.51□□□□□ -1.37
VPS50-205ENST00000441602 CTNNBL1Q8WYA6 563 aaPredicted RBP6.51□□□□□ -1.37
VPS50-205ENST00000441602 WDR24Q96S15 920 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 GPBP1L1Q9HC44 474 aaPredicted RBP6.51□□□□□ -1.37
VPS50-205ENST00000441602 RAB20Q9NX57 234 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 COQ4Q9Y3A0 265 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 REXO2Q9Y3B8 237 aaKnown RBP6.51□□□□□ -1.37
VPS50-205ENST00000441602 JRKLQ9Y4A0 524 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 LCTP09848 1927 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 BTNL10A8MVZ5 291 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 EFCAB8A8MWE9 144 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 H3BRB1 525 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 CTIFO43310 598 aaKnown RBP6.51□□□□□ -1.37
VPS50-205ENST00000441602 SNAI1O95863 264 aaPredicted RBP6.51□□□□□ -1.37
VPS50-205ENST00000441602 KLRC1P26715 233 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 PAFAH1B1P43034 410 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 MCCD1P59942 119 aaPredicted RBP6.51□□□□□ -1.37
VPS50-205ENST00000441602 PPP3CAQ08209 521 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 KIAA0753Q2KHM9 967 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 ZNF568Q3ZCX4 644 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 CBWD6Q4V339 395 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 CBWD3Q5JTY5 395 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 CBWD5Q5RIA9 395 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 MORN1Q5T089 497 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 ATF7IP2Q5U623 682 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 HGSNATQ68CP4 663 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 SRGAP1Q7Z6B7 1085 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 ZNF410Q86VK4 478 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 LRRC71Q8N4P6 559 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 CEP89Q96ST8 783 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 CARD6Q9BX69 1037 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 NFKBIZQ9BYH8 718 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 DNAI2Q9GZS0 605 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 PDCL3Q9H2J4 239 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 IKZF4Q9H2S9 585 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 TUT1Q9H6E5 874 aaKnown RBP6.51□□□□□ -1.37
VPS50-205ENST00000441602 HYOU1Q9Y4L1 999 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 MRFAP1Q9Y605 127 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 ADGRA3Q8IWK6 1321 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 ADGRA2Q96PE1 1338 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 A0A0B4J269 797 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 LRRIQ3A6PVS8 624 aaPredicted RBP6.51□□□□□ -1.37
VPS50-205ENST00000441602 TISP43B9A030 160 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 DYNC1LI2O43237 492 aaPredicted RBP6.51□□□□□ -1.37
VPS50-205ENST00000441602 EVI5O60447 810 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 ERLIN2O94905 339 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 C22orf31O95567 290 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 MMP3P08254 477 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 MCM3P25205 808 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 NOP2P46087 812 aaKnown RBP6.51□□□□□ -1.37
VPS50-205ENST00000441602 PDE6CP51160 858 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 PTENP60484 403 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 GFPT1Q06210 699 aaPredicted RBP6.51□□□□□ -1.37
VPS50-205ENST00000441602 TRPC3Q13507 836 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 PCBP1Q15365 356 aaKnown RBP eCLIP6.51□□□□□ -1.37
VPS50-205ENST00000441602 CCDC181Q5TID7 509 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 SAPCD2Q86UD0 394 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 ANKRD36BP1Q96IX9 119 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 PTPN18Q99952 460 aa6.51□□□□□ -1.37
VPS50-205ENST00000441602 RPF1Q9H9Y2 349 aaKnown RBP6.51□□□□□ -1.37
VPS50-205ENST00000441602 ADAMTS1Q9UHI8 967 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms