RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 NFE2L3Q9Y4A8 694 aa13.85□□□□□ -0.19
SCLT1-202ENST00000439369 TRIM43BA6NCK2 446 aa13.84□□□□□ -0.19
SCLT1-202ENST00000439369 TTLL13PA6NNM8 815 aa13.84□□□□□ -0.19
SCLT1-202ENST00000439369 EXTL3O43909 919 aa13.84□□□□□ -0.19
SCLT1-202ENST00000439369 NBNO60934 754 aa13.84□□□□□ -0.19
SCLT1-202ENST00000439369 ZSCAN20P17040 1043 aaPredicted RBP13.84□□□□□ -0.19
SCLT1-202ENST00000439369 FGFR4P22455 802 aa13.84□□□□□ -0.19
SCLT1-202ENST00000439369 CYP2C18P33260 490 aa13.84□□□□□ -0.19
SCLT1-202ENST00000439369 PSMC2P35998 433 aaKnown RBP13.84□□□□□ -0.19
SCLT1-202ENST00000439369 MARSP56192 900 aaKnown RBP13.84□□□□□ -0.19
SCLT1-202ENST00000439369 MCCD1P59942 119 aaPredicted RBP13.84□□□□□ -0.19
SCLT1-202ENST00000439369 NFX1Q12986 1120 aaKnown RBP13.84□□□□□ -0.19
SCLT1-202ENST00000439369 CDKAL1Q5VV42 579 aa13.84□□□□□ -0.19
SCLT1-202ENST00000439369 EEF1DP3Q658K8 133 aa13.84□□□□□ -0.19
SCLT1-202ENST00000439369 HACE1Q8IYU2 909 aa13.84□□□□□ -0.19
SCLT1-202ENST00000439369 GPD1LQ8N335 351 aa13.84□□□□□ -0.19
SCLT1-202ENST00000439369 TRIM43Q96BQ3 446 aaPredicted RBP13.84□□□□□ -0.19
SCLT1-202ENST00000439369 CBWD1Q9BRT8 395 aa13.84□□□□□ -0.19
SCLT1-202ENST00000439369 MSTO1Q9BUK6 570 aa13.84□□□□□ -0.19
SCLT1-202ENST00000439369 SRRTQ9BXP5 876 aaKnown RBP13.84□□□□□ -0.19
SCLT1-202ENST00000439369 PPP1R12CQ9BZL4 782 aa13.84□□□□□ -0.19
SCLT1-202ENST00000439369 METTL14Q9HCE5 456 aaKnown RBP13.84□□□□□ -0.19
SCLT1-202ENST00000439369 PRDM5Q9NQX1 630 aaPredicted RBP13.84□□□□□ -0.19
SCLT1-202ENST00000439369 C1orf112Q9NSG2 853 aa13.84□□□□□ -0.19
SCLT1-202ENST00000439369 ANKFY1Q9P2R3 1169 aa13.84□□□□□ -0.19
SCLT1-202ENST00000439369 UMODL1Q5DID0 1318 aa13.84□□□□□ -0.19
SCLT1-202ENST00000439369 TISP43B9A030 160 aa13.83□□□□□ -0.2
SCLT1-202ENST00000439369 CLIC2O15247 247 aa13.83□□□□□ -0.2
SCLT1-202ENST00000439369 FAM189A1O60320 539 aa13.83□□□□□ -0.2
SCLT1-202ENST00000439369 EVI5O60447 810 aa13.83□□□□□ -0.2
SCLT1-202ENST00000439369 EXOC3O60645 756 aa13.83□□□□□ -0.2
SCLT1-202ENST00000439369 ZNF623O75123 536 aa13.83□□□□□ -0.2
SCLT1-202ENST00000439369 CLTAP09496 248 aa13.83□□□□□ -0.2
SCLT1-202ENST00000439369 EPB41P11171 864 aaKnown RBP13.83□□□□□ -0.2
SCLT1-202ENST00000439369 ZNF18P17022 549 aa13.83□□□□□ -0.2
SCLT1-202ENST00000439369 EEF1GP26641 437 aaKnown RBP13.83□□□□□ -0.2
SCLT1-202ENST00000439369 GRM5P41594 1212 aa13.83□□□□□ -0.2
SCLT1-202ENST00000439369 MATR3P43243 847 aaKnown RBP eCLIP13.83□□□□□ -0.21e-6■■■■□ 19.8
SCLT1-202ENST00000439369 CYP2J2P51589 502 aa13.83□□□□□ -0.2
SCLT1-202ENST00000439369 GPNMBQ14956 572 aa13.83□□□□□ -0.2
SCLT1-202ENST00000439369 FRMD5Q7Z6J6 570 aa13.83□□□□□ -0.2
SCLT1-202ENST00000439369 USP37Q86T82 979 aa13.83□□□□□ -0.2
SCLT1-202ENST00000439369 GAS2L3Q86XJ1 694 aa13.83□□□□□ -0.2
SCLT1-202ENST00000439369 RPUSD2Q8IZ73 545 aaKnown RBP13.83□□□□□ -0.2
SCLT1-202ENST00000439369 CPB2Q96IY4 423 aa13.83□□□□□ -0.2
SCLT1-202ENST00000439369 IKZF4Q9H2S9 585 aa13.83□□□□□ -0.2
SCLT1-202ENST00000439369 TMX1Q9H3N1 280 aa13.83□□□□□ -0.2
SCLT1-202ENST00000439369 MAGEC2Q9UBF1 373 aaPredicted RBP13.83□□□□□ -0.2
SCLT1-202ENST00000439369 ZNF233A6NK53 670 aa13.82□□□□□ -0.2
SCLT1-202ENST00000439369 EFCAB14O75071 495 aa13.82□□□□□ -0.2
SCLT1-202ENST00000439369 CCL23P55773 120 aa13.82□□□□□ -0.2
SCLT1-202ENST00000439369 PPP2R3AQ06190 1150 aa13.82□□□□□ -0.2
SCLT1-202ENST00000439369 PPIGQ13427 754 aaKnown RBP eCLIP13.82□□□□□ -0.2
SCLT1-202ENST00000439369 SURF1Q15526 300 aa13.82□□□□□ -0.2
SCLT1-202ENST00000439369 SNRNP35Q16560 246 aaKnown RBP13.82□□□□□ -0.2
SCLT1-202ENST00000439369 UVSSAQ2YD98 709 aa13.82□□□□□ -0.2
SCLT1-202ENST00000439369 UBXN11Q5T124 520 aa13.82□□□□□ -0.2
SCLT1-202ENST00000439369 TWF2Q6IBS0 349 aaKnown RBP13.82□□□□□ -0.2
SCLT1-202ENST00000439369 CNKSR3Q6P9H4 555 aa13.82□□□□□ -0.2
SCLT1-202ENST00000439369 INTS8Q75QN2 995 aaKnown RBP13.82□□□□□ -0.2
SCLT1-202ENST00000439369 LUZP1Q86V48 1076 aa13.82□□□□□ -0.2
SCLT1-202ENST00000439369 FAM186BQ8IYM0 893 aa13.82□□□□□ -0.2
SCLT1-202ENST00000439369 ANKRD20A12PQ8NF67 263 aa13.82□□□□□ -0.2
SCLT1-202ENST00000439369 RSPH1Q8WYR4 309 aa13.82□□□□□ -0.2
SCLT1-202ENST00000439369 ZBTB45Q96K62 511 aaPredicted RBP13.82□□□□□ -0.2
SCLT1-202ENST00000439369 TSPAN18Q96SJ8 248 aa13.82□□□□□ -0.2
SCLT1-202ENST00000439369 CCDC94Q9BW85 323 aaPredicted RBP13.82□□□□□ -0.2
SCLT1-202ENST00000439369 OSBPL7Q9BZF2 842 aa13.82□□□□□ -0.2
SCLT1-202ENST00000439369 TRIM6Q9C030 488 aaPredicted RBP13.82□□□□□ -0.2
SCLT1-202ENST00000439369 HAPLN2Q9GZV7 340 aa13.82□□□□□ -0.2
SCLT1-202ENST00000439369 TSPYL2Q9H2G4 693 aaPredicted RBP13.82□□□□□ -0.2
SCLT1-202ENST00000439369 RGS18Q9NS28 235 aa13.82□□□□□ -0.2
SCLT1-202ENST00000439369 FANCLQ9NW38 375 aa13.82□□□□□ -0.2
SCLT1-202ENST00000439369 CPSF3Q9UKF6 684 aaKnown RBP13.82□□□□□ -0.2
SCLT1-202ENST00000439369 USP20Q9Y2K6 914 aa13.82□□□□□ -0.2
SCLT1-202ENST00000439369 ALPK3Q96L96 1907 aa13.82□□□□□ -0.2
SCLT1-202ENST00000439369 A0A0U1RQF3 1178 aa13.81□□□□□ -0.2
SCLT1-202ENST00000439369 AKAP3O75969 853 aa13.81□□□□□ -0.2
SCLT1-202ENST00000439369 IL18RAPO95256 599 aa13.81□□□□□ -0.2
SCLT1-202ENST00000439369 NPTXRO95502 500 aa13.81□□□□□ -0.2
SCLT1-202ENST00000439369 KRT13P13646 458 aa13.81□□□□□ -0.2
SCLT1-202ENST00000439369 FAM189BP81408 668 aa13.81□□□□□ -0.2
SCLT1-202ENST00000439369 CEP135Q66GS9 1140 aa13.81□□□□□ -0.2
SCLT1-202ENST00000439369 SLC24A5Q71RS6 500 aa13.81□□□□□ -0.2
SCLT1-202ENST00000439369 MRPL10Q7Z7H8 261 aaKnown RBP13.81□□□□□ -0.2
SCLT1-202ENST00000439369 ZBTB33Q86T24 672 aa13.81□□□□□ -0.2
SCLT1-202ENST00000439369 IRF2BP1Q8IU81 584 aa13.81□□□□□ -0.2
SCLT1-202ENST00000439369 BRSK2Q8IWQ3 736 aa13.81□□□□□ -0.2
SCLT1-202ENST00000439369 CD302Q8IX05 232 aa13.81□□□□□ -0.2
SCLT1-202ENST00000439369 C7orf61Q8IZ16 206 aa13.81□□□□□ -0.2
SCLT1-202ENST00000439369 DBF4BQ8NFT6 615 aa13.81□□□□□ -0.2
SCLT1-202ENST00000439369 TMC2Q8TDI7 906 aa13.81□□□□□ -0.2
SCLT1-202ENST00000439369 PGBD4Q96DM1 585 aa13.81□□□□□ -0.2
SCLT1-202ENST00000439369 BORCS6Q96GS4 357 aa13.81□□□□□ -0.2
SCLT1-202ENST00000439369 SCLYQ96I15 445 aa13.81□□□□□ -0.2
SCLT1-202ENST00000439369 CNOT6LQ96LI5 555 aaKnown RBP13.81□□□□□ -0.2
SCLT1-202ENST00000439369 MFSD14AQ96MC6 490 aa13.81□□□□□ -0.2
SCLT1-202ENST00000439369 ADAM2Q99965 735 aa13.81□□□□□ -0.2
SCLT1-202ENST00000439369 RBSNQ9H1K0 784 aa13.81□□□□□ -0.2
SCLT1-202ENST00000439369 HSD3B7Q9H2F3 369 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms