RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 BCAR1P56945 870 aa13.42□□□□□ -0.26
PTPRF-208ENST00000437607 KRT17Q04695 432 aa13.42□□□□□ -0.26
PTPRF-208ENST00000437607 SMC1AQ14683 1233 aaKnown RBP13.42□□□□□ -0.26
PTPRF-208ENST00000437607 E2F4Q16254 413 aa13.42□□□□□ -0.26
PTPRF-208ENST00000437607 TMEM173Q86WV6 379 aaPredicted RBP13.42□□□□□ -0.26
PTPRF-208ENST00000437607 LARP4BQ92615 738 aaKnown RBP13.42□□□□□ -0.26
PTPRF-208ENST00000437607 DYDC2Q96IM9 177 aa13.42□□□□□ -0.26
PTPRF-208ENST00000437607 PRRX2Q99811 253 aa13.42□□□□□ -0.26
PTPRF-208ENST00000437607 GZF1Q9H116 711 aaPredicted RBP13.42□□□□□ -0.26
PTPRF-208ENST00000437607 SMOC2Q9H3U7 446 aa13.42□□□□□ -0.26
PTPRF-208ENST00000437607 FAM86C1Q9NVL1 165 aa13.42□□□□□ -0.26
PTPRF-208ENST00000437607 FRYLO94915 3013 aa13.42□□□□□ -0.26
PTPRF-208ENST00000437607 DCHS1Q96JQ0 3298 aa13.42□□□□□ -0.26
PTPRF-208ENST00000437607 IGKV6-21A0A0C4DH24 114 aa13.41□□□□□ -0.26
PTPRF-208ENST00000437607 MEIS3P2A8K0S8 358 aa13.41□□□□□ -0.26
PTPRF-208ENST00000437607 C2CD4DB7Z1M9 353 aa13.41□□□□□ -0.26
PTPRF-208ENST00000437607 LETM1O95202 739 aaPredicted RBP13.41□□□□□ -0.26
PTPRF-208ENST00000437607 P4HBP07237 508 aaKnown RBP13.41□□□□□ -0.26
PTPRF-208ENST00000437607 TBC1D8BQ0IIM8 1120 aa13.41□□□□□ -0.26
PTPRF-208ENST00000437607 CTTNQ14247 550 aaKnown RBP13.41□□□□□ -0.26
PTPRF-208ENST00000437607 POSTNQ15063 836 aa13.41□□□□□ -0.26
PTPRF-208ENST00000437607 CAMK4Q16566 473 aa13.41□□□□□ -0.26
PTPRF-208ENST00000437607 LONRF3Q496Y0 759 aa13.41□□□□□ -0.26
PTPRF-208ENST00000437607 TPH2Q8IWU9 490 aa13.41□□□□□ -0.26
PTPRF-208ENST00000437607 ZNF710Q8N1W2 664 aa13.41□□□□□ -0.26
PTPRF-208ENST00000437607 KCTD17Q8N5Z5 321 aa13.41□□□□□ -0.26
PTPRF-208ENST00000437607 KREMEN2Q8NCW0 462 aa13.41□□□□□ -0.26
PTPRF-208ENST00000437607 NLRP7Q8WX94 980 aa13.41□□□□□ -0.26
PTPRF-208ENST00000437607 RAD54LQ92698 747 aa13.41□□□□□ -0.26
PTPRF-208ENST00000437607 CASP10Q92851 521 aa13.41□□□□□ -0.26
PTPRF-208ENST00000437607 LPPQ93052 612 aa13.41□□□□□ -0.26
PTPRF-208ENST00000437607 RIPOR3Q96MK2 946 aa13.41□□□□□ -0.26
PTPRF-208ENST00000437607 PNMA5Q96PV4 448 aa13.41□□□□□ -0.26
PTPRF-208ENST00000437607 SH2D3AQ9BRG2 576 aa13.41□□□□□ -0.26
PTPRF-208ENST00000437607 NIFKQ9BYG3 293 aaKnown RBP13.41□□□□□ -0.26
PTPRF-208ENST00000437607 ZBP1Q9H171 429 aa13.41□□□□□ -0.26
PTPRF-208ENST00000437607 ADAM7Q9H2U9 754 aa13.41□□□□□ -0.26
PTPRF-208ENST00000437607 RGL1Q9NZL6 768 aa13.41□□□□□ -0.26
PTPRF-208ENST00000437607 KIAA1024Q9UPX6 916 aa13.41□□□□□ -0.26
PTPRF-208ENST00000437607 RIF1Q5UIP0 2472 aaKnown RBP13.41□□□□□ -0.26
PTPRF-208ENST00000437607 TRIP11Q15643 1979 aa13.41□□□□□ -0.26
PTPRF-208ENST00000437607 FAM186AA6NE01 2351 aa13.4□□□□□ -0.26
PTPRF-208ENST00000437607 ZNF292O60281 2723 aa13.4□□□□□ -0.26
PTPRF-208ENST00000437607 A0A087WZ62 844 aa13.4□□□□□ -0.26
PTPRF-208ENST00000437607 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.4□□□□□ -0.26
PTPRF-208ENST00000437607 SSBP05455 408 aaKnown RBP eCLIP13.4□□□□□ -0.26
PTPRF-208ENST00000437607 WEE2P0C1S8 567 aa13.4□□□□□ -0.26
PTPRF-208ENST00000437607 PHKA2P46019 1235 aa13.4□□□□□ -0.26
PTPRF-208ENST00000437607 QARSP47897 775 aaKnown RBP13.4□□□□□ -0.26
PTPRF-208ENST00000437607 PSMC5P62195 406 aa13.4□□□□□ -0.26
PTPRF-208ENST00000437607 ZSCAN23Q3MJ62 389 aa13.4□□□□□ -0.26
PTPRF-208ENST00000437607 MTERF2Q49AM1 385 aa13.4□□□□□ -0.26
PTPRF-208ENST00000437607 CATSPER3Q86XQ3 398 aa13.4□□□□□ -0.26
PTPRF-208ENST00000437607 C12orf76Q8N812 135 aaPredicted RBP13.4□□□□□ -0.26
PTPRF-208ENST00000437607 BCL7CQ8WUZ0 217 aaPredicted RBP13.4□□□□□ -0.26
PTPRF-208ENST00000437607 AUTS2Q8WXX7 1259 aa13.4□□□□□ -0.26
PTPRF-208ENST00000437607 FDXACB1Q9BRP7 624 aaPredicted RBP13.4□□□□□ -0.26
PTPRF-208ENST00000437607 TRAIPQ9BWF2 469 aa13.4□□□□□ -0.26
PTPRF-208ENST00000437607 ZSWIM4Q9H7M6 989 aa13.4□□□□□ -0.26
PTPRF-208ENST00000437607 SEPT9Q9UHD8 586 aaPredicted RBP13.4□□□□□ -0.26
PTPRF-208ENST00000437607 NR2E1Q9Y466 385 aa13.4□□□□□ -0.26
PTPRF-208ENST00000437607 B4GALT3O60512 393 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 SMC2O95347 1197 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 CXCL14O95715 111 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 SPATA31C1P0DKV0 1188 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 EPCAMP16422 314 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 AFMP43652 599 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 AMPD3Q01432 767 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 ITIH3Q06033 890 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 ECM1Q16610 540 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 SV2BQ7L1I2 683 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 KSR1Q8IVT5 923 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 ELOA2Q8IYF1 753 aaPredicted RBP13.39□□□□□ -0.27
PTPRF-208ENST00000437607 GRAMD1CQ8IYS0 662 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 VPS52Q8N1B4 723 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 SLC22A17Q8WUG5 538 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 SCLT1Q96NL6 688 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 HSD17B14Q9BPX1 270 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 VN1R3Q9BXE9 311 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 MRPL9Q9BYD2 267 aaKnown RBP13.39□□□□□ -0.27
PTPRF-208ENST00000437607 LRRC27Q9C0I9 530 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 NRDE2Q9H7Z3 1164 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 CHST12Q9NRB3 414 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 TBC1D13Q9NVG8 400 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 SORCS3Q9UPU3 1222 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 DNM3Q9UQ16 869 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 DMXL1Q9Y485 3027 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 FANCMQ8IYD8 2048 aa13.39□□□□□ -0.27
PTPRF-208ENST00000437607 SYCE3A1L190 88 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 ARHGEF35A5YM69 484 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 E9PMD0 336 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 ZC3H11AO75152 810 aaKnown RBP eCLIP13.38□□□□□ -0.27
PTPRF-208ENST00000437607 LYPLA2O95372 231 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 MYL1P05976 194 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 GALTP07902 379 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 PLA2G4BP0C869 781 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 CTSAP10619 480 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 ALDH7A1P49419 539 aaKnown RBP13.38□□□□□ -0.27
PTPRF-208ENST00000437607 ASIC1P78348 528 aa13.38□□□□□ -0.27
PTPRF-208ENST00000437607 PNOCQ13519 176 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms