RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 BRAFP15056 766 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 EEF1GP26641 437 aaKnown RBP5.86□□□□□ -1.47
VPS13A-207ENST00000419472 GALNSP34059 522 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 ARL4CP56559 192 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 RPL11P62913 178 aaKnown RBP5.86□□□□□ -1.47
VPS13A-207ENST00000419472 ERVK-7P63135 1459 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 CREMQ03060 361 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 CDPF1Q6NVV7 123 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 TOP6BLQ8N6T0 577 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 C7orf31Q8N865 590 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 LSMEM1Q8N8F7 131 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 ADAMTS18Q8TE60 1221 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 BRI3BPQ8WY22 251 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 HVCN1Q96D96 273 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 RSRC1Q96IZ7 334 aaKnown RBP5.86□□□□□ -1.47
VPS13A-207ENST00000419472 PTCHD1Q96NR3 888 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 CDADC1Q9BWV3 514 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 MARCH2Q9P0N8 246 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 USP36Q9P275 1121 aaKnown RBP5.86□□□□□ -1.47
VPS13A-207ENST00000419472 GULP1Q9UBP9 304 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 KCNG1Q9UIX4 513 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 TELO2Q9Y4R8 837 aa5.86□□□□□ -1.47
VPS13A-207ENST00000419472 TNRQ92752 1358 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 MEGF11A6BM72 1044 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 MAFKO60675 156 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 PPFIA3O75145 1194 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 EPXP11678 715 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 HNRNPLP14866 589 aaKnown RBP eCLIP5.85□□□□□ -1.47
VPS13A-207ENST00000419472 HOXD12P35452 270 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 TNK2Q07912 1038 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 CACNB2Q08289 660 aaPredicted RBP5.85□□□□□ -1.47
VPS13A-207ENST00000419472 HABP4Q5JVS0 413 aaKnown RBP5.85□□□□□ -1.47
VPS13A-207ENST00000419472 C4orf50Q6ZRC1 276 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 EP400NLQ6ZTU2 488 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 ANKRD52Q8NB46 1076 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 DCAF11Q8TEB1 546 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 AASSQ9UDR5 926 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 DSEQ9UL01 958 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 NAIPQ13075 1403 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 FAM90A27PA6NNH2 459 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 TOR1BO14657 336 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 PPP1R11O60927 126 aaPredicted RBP5.85□□□□□ -1.47
VPS13A-207ENST00000419472 NID1P14543 1247 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 MALLQ13021 153 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 FIGNQ5HY92 759 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 FAM205BPQ63HN1 556 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 ESPNLQ6ZVH7 1005 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 FTSJ3Q8IY81 847 aaKnown RBP5.85□□□□□ -1.47
VPS13A-207ENST00000419472 TXLNBQ8N3L3 684 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 GALNT15Q8N3T1 639 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 ZNF655Q8N720 491 aaPredicted RBP5.85□□□□□ -1.47
VPS13A-207ENST00000419472 ZNF566Q969W8 418 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 UNC45AQ9H3U1 944 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 KCNH7Q9NS40 1196 aa5.85□□□□□ -1.47
VPS13A-207ENST00000419472 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.85□□□□□ -1.47
VPS13A-207ENST00000419472 UBR1Q8IWV7 1749 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 ZNF205O95201 554 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 SYPP08247 313 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 JUPP14923 745 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 SLC7A1P30825 629 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 SLC14A2Q15849 920 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 CNGA2Q16280 664 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 C3orf38Q5JPI3 329 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 SV2AQ7L0J3 742 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 ENOSF1Q7L5Y1 443 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 CENPIQ92674 756 aaPredicted RBP5.84□□□□□ -1.47
VPS13A-207ENST00000419472 FOXP3Q9BZS1 431 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 CPA4Q9UI42 421 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 SLC39A10Q9ULF5 831 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 ANKRD50Q9ULJ7 1429 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 H3BUI4 141 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 MYO1FO00160 1098 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 DCAF7P61962 342 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 SPIRE1Q08AE8 756 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 PLS1Q14651 629 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 EPHA7Q15375 998 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 FDX2Q6P4F2 183 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 DAGLBQ8NCG7 672 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 FBLIM1Q8WUP2 373 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 FERMT2Q96AC1 680 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 HEPHQ9BQS7 1158 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 CNPPD1Q9BV87 410 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 WASH6PQ9NQA3 447 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 FBLN5Q9UBX5 448 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 KCNH3Q9ULD8 1083 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 SCAF8Q9UPN6 1271 aaKnown RBP5.84□□□□□ -1.47
VPS13A-207ENST00000419472 TMEM98Q9Y2Y6 226 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 MED14O60244 1454 aa5.84□□□□□ -1.47
VPS13A-207ENST00000419472 IRAK2O43187 625 aa5.84□□□□□ -1.48
VPS13A-207ENST00000419472 FRS3O43559 492 aa5.84□□□□□ -1.48
VPS13A-207ENST00000419472 PRPF6O94906 941 aaKnown RBP5.84□□□□□ -1.48
VPS13A-207ENST00000419472 THP07101 528 aa5.84□□□□□ -1.48
VPS13A-207ENST00000419472 SERPINF1P36955 418 aa5.84□□□□□ -1.48
VPS13A-207ENST00000419472 PREPP48147 710 aa5.84□□□□□ -1.48
VPS13A-207ENST00000419472 SUMO3P55854 103 aaPredicted RBP5.84□□□□□ -1.48
VPS13A-207ENST00000419472 MYBPC3Q14896 1274 aa5.84□□□□□ -1.48
VPS13A-207ENST00000419472 TAF11Q15544 211 aa5.84□□□□□ -1.48
VPS13A-207ENST00000419472 ADRM1Q16186 407 aa5.84□□□□□ -1.48
VPS13A-207ENST00000419472 CCNG2Q16589 344 aa5.84□□□□□ -1.48
VPS13A-207ENST00000419472 FAM110CQ1W6H9 321 aa5.84□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms