RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 DHX34Q14147 1143 aaKnown RBP10.62□□□□□ -0.71
SS18-203ENST00000415083 CCDC137Q6PK04 289 aaKnown RBP10.62□□□□□ -0.71
SS18-203ENST00000415083 EXOC3L1Q86VI1 746 aa10.62□□□□□ -0.71
SS18-203ENST00000415083 KCTD17Q8N5Z5 321 aa10.62□□□□□ -0.71
SS18-203ENST00000415083 BSNDQ8WZ55 320 aa10.62□□□□□ -0.71
SS18-203ENST00000415083 MXRA8Q9BRK3 442 aa10.62□□□□□ -0.71
SS18-203ENST00000415083 KCNH7Q9NS40 1196 aa10.62□□□□□ -0.71
SS18-203ENST00000415083 DIS3Q9Y2L1 958 aaKnown RBP10.62□□□□□ -0.71
SS18-203ENST00000415083 STK24Q9Y6E0 443 aa10.62□□□□□ -0.71
SS18-203ENST00000415083 ASTN2O75129 1339 aaPredicted RBP10.62□□□□□ -0.71
SS18-203ENST00000415083 ENTPD3O75355 529 aa10.62□□□□□ -0.71
SS18-203ENST00000415083 COILP38432 576 aaPredicted RBP10.62□□□□□ -0.71
SS18-203ENST00000415083 GPC5P78333 572 aa10.62□□□□□ -0.71
SS18-203ENST00000415083 LDHDQ86WU2 507 aa10.62□□□□□ -0.71
SS18-203ENST00000415083 PRMT1Q99873 361 aaKnown RBP10.62□□□□□ -0.71
SS18-203ENST00000415083 DEFB129Q9H1M3 183 aa10.62□□□□□ -0.71
SS18-203ENST00000415083 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.62□□□□□ -0.71
SS18-203ENST00000415083 CTTNBP2NLQ9P2B4 639 aa10.62□□□□□ -0.71
SS18-203ENST00000415083 PTPN22Q9Y2R2 807 aa10.62□□□□□ -0.71
SS18-203ENST00000415083 NEU2Q9Y3R4 380 aa10.62□□□□□ -0.71
SS18-203ENST00000415083 RLFQ13129 1914 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 CLRN2A0PK11 232 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 GOLGA6L10A6NI86 522 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 GTF2BQ00403 316 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 PLCB4Q15147 1175 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 TMEM63BQ5T3F8 832 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 CGB2Q6NT52 195 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 VSTM1Q6UX27 236 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 SLC13A5Q86YT5 568 aaPredicted RBP10.61□□□□□ -0.71
SS18-203ENST00000415083 C12orf56Q8IXR9 622 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 CYP4X1Q8N118 509 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 SHC3Q92529 594 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 CHMP6Q96FZ7 201 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 RAB17Q9H0T7 212 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 CHST7Q9NS84 486 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 ZBTB21Q9ULJ3 1066 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 TPX2Q9ULW0 747 aaKnown RBP10.61□□□□□ -0.71
SS18-203ENST00000415083 R3HDM2Q9Y2K5 976 aaKnown RBP10.61□□□□□ -0.71
SS18-203ENST00000415083 ADGRA3Q8IWK6 1321 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 LCTP09848 1927 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 RTN2O75298 545 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 ITGBL1O95965 494 aaPredicted RBP10.61□□□□□ -0.71
SS18-203ENST00000415083 PTGER2P43116 358 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 CNGA2Q16280 664 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 C2CD6Q53TS8 623 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 PRUNE1Q86TP1 453 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 ARFGAP2Q8N6H7 521 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 NEK9Q8TD19 979 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 RPS6KC1Q96S38 1066 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 TMEM109Q9BVC6 243 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 COL11A1P12107 1806 aaPredicted RBP10.61□□□□□ -0.71
SS18-203ENST00000415083 CTNND1O60716 968 aaKnown RBP10.61□□□□□ -0.71
SS18-203ENST00000415083 ATP2C2O75185 946 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 KIAA0754O94854 1291 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 CCNE2O96020 404 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 KRT13P13646 458 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 ALDH1B1P30837 517 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 MAP2K1Q02750 393 aaPredicted RBP10.61□□□□□ -0.71
SS18-203ENST00000415083 XRCC4Q13426 336 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 ODF2Q5BJF6 829 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 PLA2G4FQ68DD2 849 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 CYB5D1Q6P9G0 228 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 RHOT2Q8IXI1 618 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 DHX37Q8IY37 1157 aaKnown RBP10.61□□□□□ -0.71
SS18-203ENST00000415083 C12orf50Q8NA57 414 aaPredicted RBP10.61□□□□□ -0.71
SS18-203ENST00000415083 ATG4AQ8WYN0 398 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 ZNF622Q969S3 477 aaKnown RBP eCLIP10.61□□□□□ -0.714e-7■□□□□ 10.6
SS18-203ENST00000415083 SAAL1Q96ER3 474 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 NUP85Q9BW27 656 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 CCDC134Q9H6E4 229 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.61□□□□□ -0.71
SS18-203ENST00000415083 KCND2Q9NZV8 630 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 SLC12A4Q9UP95 1085 aa10.61□□□□□ -0.71
SS18-203ENST00000415083 MROH7Q68CQ1 1323 aa10.6□□□□□ -0.71
SS18-203ENST00000415083 SLC16A4O15374 487 aa10.6□□□□□ -0.71
SS18-203ENST00000415083 DLATP10515 647 aaKnown RBP10.6□□□□□ -0.71
SS18-203ENST00000415083 MUTP22033 750 aa10.6□□□□□ -0.71
SS18-203ENST00000415083 CHRNA3P32297 505 aa10.6□□□□□ -0.71
SS18-203ENST00000415083 NCKAP1LP55160 1127 aa10.6□□□□□ -0.71
SS18-203ENST00000415083 RASA3Q14644 834 aa10.6□□□□□ -0.71
SS18-203ENST00000415083 HS2ST1Q7LGA3 356 aa10.6□□□□□ -0.71
SS18-203ENST00000415083 C1orf54Q8WWF1 131 aa10.6□□□□□ -0.71
SS18-203ENST00000415083 ZNF516Q92618 1163 aa10.6□□□□□ -0.71
SS18-203ENST00000415083 AGO4Q9HCK5 861 aaKnown RBP10.6□□□□□ -0.71
SS18-203ENST00000415083 ABCF3Q9NUQ8 709 aa10.6□□□□□ -0.71
SS18-203ENST00000415083 TLDC2A0PJX2 215 aa10.6□□□□□ -0.71
SS18-203ENST00000415083 CLDN3O15551 220 aa10.6□□□□□ -0.71
SS18-203ENST00000415083 STBD1O95210 358 aa10.6□□□□□ -0.71
SS18-203ENST00000415083 GH1P01241 217 aa10.6□□□□□ -0.71
SS18-203ENST00000415083 CYP11B1P15538 503 aa10.6□□□□□ -0.71
SS18-203ENST00000415083 EIF3BP55884 814 aaKnown RBP10.6□□□□□ -0.71
SS18-203ENST00000415083 MYBPC2Q14324 1141 aa10.6□□□□□ -0.71
SS18-203ENST00000415083 LONRF1Q17RB8 773 aa10.6□□□□□ -0.71
SS18-203ENST00000415083 CC2D2BQ6DHV5 1058 aa10.6□□□□□ -0.71
SS18-203ENST00000415083 PHLDB2Q86SQ0 1253 aa10.6□□□□□ -0.71
SS18-203ENST00000415083 TAS1R2Q8TE23 839 aa10.6□□□□□ -0.71
SS18-203ENST00000415083 HVCN1Q96D96 273 aa10.6□□□□□ -0.71
SS18-203ENST00000415083 TEKT3Q9BXF9 490 aa10.6□□□□□ -0.71
SS18-203ENST00000415083 GOPCQ9HD26 462 aa10.6□□□□□ -0.71
SS18-203ENST00000415083 CNOT7Q9UIV1 285 aaKnown RBP10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms