RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 RSAD2Q8WXG1 361 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 MAGOHBQ96A72 148 aaKnown RBP9.75□□□□□ -0.85
LIG4-202ENST00000405925 FAM107BQ9H098 131 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 DPH5Q9H2P9 285 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 XPNPEP3Q9NQH7 507 aa9.75□□□□□ -0.85
LIG4-202ENST00000405925 LRRD1A4D1F6 860 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 GYPCP04921 128 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 LGALS2P05162 132 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 ATP2A2P16615 1042 aaKnown RBP9.74□□□□□ -0.85
LIG4-202ENST00000405925 SARSP49591 514 aaKnown RBP9.74□□□□□ -0.85
LIG4-202ENST00000405925 NOP14P78316 857 aaKnown RBP9.74□□□□□ -0.85
LIG4-202ENST00000405925 LAMTOR4Q0VGL1 99 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 MAP2K5Q13163 448 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 PAK2Q13177 524 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 ITGB3BPQ13352 177 aaPredicted RBP9.74□□□□□ -0.85
LIG4-202ENST00000405925 GRIK4Q16099 956 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 DNAJC21Q5F1R6 531 aaKnown RBP9.74□□□□□ -0.85
LIG4-202ENST00000405925 IQSEC1Q6DN90 963 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 MRRFQ96E11 262 aaKnown RBP9.74□□□□□ -0.85
LIG4-202ENST00000405925 INPP4AQ96PE3 977 aaPredicted RBP9.74□□□□□ -0.85
LIG4-202ENST00000405925 IQCGQ9H095 443 aaKnown RBP9.74□□□□□ -0.85
LIG4-202ENST00000405925 TMEM8AQ9HCN3 771 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 COL20A1Q9P218 1284 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 DDX41Q9UJV9 622 aaKnown RBP9.74□□□□□ -0.85
LIG4-202ENST00000405925 OPA1O60313 960 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 EVI5O60447 810 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 TFRCP02786 760 aaKnown RBP9.74□□□□□ -0.85
LIG4-202ENST00000405925 ZNF18P17022 549 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 PPP1R21Q6ZMI0 780 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 THEM5Q8N1Q8 247 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 NME8Q8N427 588 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 ARRDC4Q8NCT1 418 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 C12orf42Q96LP6 360 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 MMTAG2Q9BU76 263 aaKnown RBP9.74□□□□□ -0.85
LIG4-202ENST00000405925 STK33Q9BYT3 514 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 KLK14Q9P0G3 267 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 ZNF214Q9UL59 606 aaPredicted RBP9.74□□□□□ -0.85
LIG4-202ENST00000405925 KRT1P04264 644 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 CLTAP09496 248 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 ZBTB48P10074 688 aaPredicted RBP9.74□□□□□ -0.85
LIG4-202ENST00000405925 ITGA4P13612 1032 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 SLC12A3P55017 1021 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 SNRPFP62306 86 aaKnown RBP9.74□□□□□ -0.85
LIG4-202ENST00000405925 TSPY1Q01534 308 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 PPP2R5DQ14738 602 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 FSCN1Q16658 493 aaKnown RBP9.74□□□□□ -0.85
LIG4-202ENST00000405925 CELF3Q5SZQ8 465 aaKnown RBP9.74□□□□□ -0.85
LIG4-202ENST00000405925 GLIS3Q8NEA6 775 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 NSMCE1Q8WV22 266 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 RAB17Q9H0T7 212 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 STARD7Q9NQZ5 370 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 CWC15Q9P013 229 aaKnown RBP9.74□□□□□ -0.85
LIG4-202ENST00000405925 FAM169AQ9Y6X4 670 aa9.74□□□□□ -0.85
LIG4-202ENST00000405925 FAM237AA0A1B0GTK4 181 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 USP27XA6NNY8 438 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 ADORA2BP29275 332 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 DYNLT1P63172 113 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 GPC5P78333 572 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 MRPS9P82933 396 aaKnown RBP9.73□□□□□ -0.85
LIG4-202ENST00000405925 NCAPHQ15003 741 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 NPY5RQ15761 445 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 UAP1Q16222 522 aaPredicted RBP9.73□□□□□ -0.85
LIG4-202ENST00000405925 NOL9Q5SY16 702 aaKnown RBP9.73□□□□□ -0.85
LIG4-202ENST00000405925 GJB7Q6PEY0 223 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 GLB1LQ6UWU2 654 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 SH3RF1Q7Z6J0 888 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 SIAH1Q8IUQ4 282 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 KRT222Q8N1A0 295 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 TC2NQ8N9U0 490 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 PAIP2Q9BPZ3 127 aaKnown RBP9.73□□□□□ -0.85
LIG4-202ENST00000405925 PDGFCQ9NRA1 345 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 SCINQ9Y6U3 715 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 ITIH6Q6UXX5 1313 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 H7C0C1 242 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 PALMO75781 387 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 KIAA0754O94854 1291 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 PGK1P00558 417 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 PNMA6AP0CW24 399 aaPredicted RBP9.73□□□□□ -0.85
LIG4-202ENST00000405925 PSMA2P25787 234 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 ANXA13P27216 316 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 ATP5OP48047 213 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 SLC35G1Q2M3R5 365 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 SGSM1Q2NKQ1 1148 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 SHCBP1Q8NEM2 672 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 DNAJB3Q8WWF6 145 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 TEPSINQ96N21 525 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 TSNARE1Q96NA8 513 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 ERGIC2Q96RQ1 377 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 KRT12Q99456 494 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 HSD17B14Q9BPX1 270 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 ATP8B3O60423 1300 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 A0A0G2JLL6 359 aaPredicted RBP9.73□□□□□ -0.85
LIG4-202ENST00000405925 ERICH4A6NGS2 130 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 SPATA31C2B4DYI2 1134 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 EIF3CLB5ME19 914 aaKnown RBP9.73□□□□□ -0.85
LIG4-202ENST00000405925 PGRMC1O00264 195 aaKnown RBP9.73□□□□□ -0.85
LIG4-202ENST00000405925 WEE2P0C1S8 567 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 KCNA1Q09470 495 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 PPP2R5EQ16537 467 aa9.73□□□□□ -0.85
LIG4-202ENST00000405925 CASC4Q6P4E1 433 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms