RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 TAF2Q6P1X5 1199 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 KRBA2Q6ZNG9 492 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 TSHZ1Q6ZSZ6 1077 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 DAW1Q8N136 415 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 PDILTQ8N807 584 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 MCPH1Q8NEM0 835 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 ATXN2LQ8WWM7 1075 aaKnown RBP10.17□□□□□ -0.78
VPS53-203ENST00000401468 DNAJC19Q96DA6 116 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 C7orf25Q9BPX7 421 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 JPH2Q9BR39 696 aaPredicted RBP10.17□□□□□ -0.78
VPS53-203ENST00000401468 IGFLR1Q9H665 355 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 ALG13Q9NP73 1137 aaKnown RBP10.17□□□□□ -0.78
VPS53-203ENST00000401468 ODF2LQ9ULJ1 636 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 PADI3Q9ULW8 664 aa10.17□□□□□ -0.78
VPS53-203ENST00000401468 NOC2LQ9Y3T9 749 aaKnown RBP10.17□□□□□ -0.78
VPS53-203ENST00000401468 MRPL42Q9Y6G3 142 aaKnown RBP10.17□□□□□ -0.78
VPS53-203ENST00000401468 ADGRA3Q8IWK6 1321 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 A0A087WWV3 80 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 ARHGEF35A5YM69 484 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 FAM86C2PA6NEL3 165 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 MYMKA6NI61 221 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 ST8SIA5O15466 376 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 EFCAB14O75071 495 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 ARL2P36404 184 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 GUCA2AQ02747 115 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 EHHADHQ08426 723 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 PAK2Q13177 524 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 GIT2Q14161 759 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 BTG3Q14201 252 aaPredicted RBP10.16□□□□□ -0.78
VPS53-203ENST00000401468 SV2BQ7L1I2 683 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 RSPH3Q86UC2 560 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 KIAA0319LQ8IZA0 1049 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 NME8Q8N427 588 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 FIBCD1Q8N539 461 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 SPATA20Q8TB22 786 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 GPT2Q8TD30 523 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 SLC7A3Q8WY07 619 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 DHX58Q96C10 678 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 PLIN2Q99541 437 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 NTPCRQ9BSD7 190 aaKnown RBP10.16□□□□□ -0.78
VPS53-203ENST00000401468 RUSC1Q9BVN2 902 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 NFKBIZQ9BYH8 718 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 PANK2Q9BZ23 570 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 CELF4Q9BZC1 486 aaKnown RBP10.16□□□□□ -0.78
VPS53-203ENST00000401468 TRIM9Q9C026 710 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 LRRC27Q9C0I9 530 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 C17orf75Q9HAS0 396 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 ATP6V0A4Q9HBG4 840 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 CD320Q9NPF0 282 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 SERTAD1Q9UHV2 236 aa10.16□□□□□ -0.78
VPS53-203ENST00000401468 ANK1P16157 1881 aa10.15□□□□□ -0.78
VPS53-203ENST00000401468 M0QZ92 97 aa10.15□□□□□ -0.78
VPS53-203ENST00000401468 LINC01565O15544 149 aa10.15□□□□□ -0.78
VPS53-203ENST00000401468 DXOO77932 396 aaKnown RBP10.15□□□□□ -0.78
VPS53-203ENST00000401468 LINC00271P0C7V0 271 aa10.15□□□□□ -0.78
VPS53-203ENST00000401468 FGFR1P11362 822 aa10.15□□□□□ -0.78
VPS53-203ENST00000401468 IL9P15248 144 aa10.15□□□□□ -0.78
VPS53-203ENST00000401468 PTMSP20962 102 aa10.15□□□□□ -0.78
VPS53-203ENST00000401468 DNAJB1P25685 340 aa10.15□□□□□ -0.78
VPS53-203ENST00000401468 PBX3P40426 434 aa10.15□□□□□ -0.78
VPS53-203ENST00000401468 POLGP54098 1239 aaPredicted RBP10.15□□□□□ -0.78
VPS53-203ENST00000401468 CDC42EP1Q00587 391 aa10.15□□□□□ -0.78
VPS53-203ENST00000401468 DRP2Q13474 957 aa10.15□□□□□ -0.78
VPS53-203ENST00000401468 ZRSR1Q15695 479 aaKnown RBP10.15□□□□□ -0.78
VPS53-203ENST00000401468 FAM102BQ5T8I3 360 aa10.15□□□□□ -0.78
VPS53-203ENST00000401468 NT5DC1Q5TFE4 455 aa10.15□□□□□ -0.78
VPS53-203ENST00000401468 IER5Q5VY09 327 aa10.15□□□□□ -0.78
VPS53-203ENST00000401468 EFCAB12Q6NXP0 572 aa10.15□□□□□ -0.78
VPS53-203ENST00000401468 KANK3Q6NY19 840 aa10.15□□□□□ -0.78
VPS53-203ENST00000401468 RASSF8Q8NHQ8 419 aa10.15□□□□□ -0.78
VPS53-203ENST00000401468 PAGE5Q96GU1 130 aa10.15□□□□□ -0.78
VPS53-203ENST00000401468 REEP2Q9BRK0 252 aa10.15□□□□□ -0.78
VPS53-203ENST00000401468 LRFN3Q9BTN0 628 aa10.15□□□□□ -0.78
VPS53-203ENST00000401468 UBE2ZQ9H832 354 aaPredicted RBP10.15□□□□□ -0.78
VPS53-203ENST00000401468 TOR4AQ9NXH8 423 aa10.15□□□□□ -0.78
VPS53-203ENST00000401468 DACT1Q9NYF0 836 aa10.15□□□□□ -0.78
VPS53-203ENST00000401468 ASAP2O43150 1006 aa10.14□□□□□ -0.79
VPS53-203ENST00000401468 KLRC4O43908 158 aa10.14□□□□□ -0.79
VPS53-203ENST00000401468 USO1O60763 962 aaKnown RBP10.14□□□□□ -0.79
VPS53-203ENST00000401468 HIP1RO75146 1068 aa10.14□□□□□ -0.79
VPS53-203ENST00000401468 GPR32O75388 356 aa10.14□□□□□ -0.79
VPS53-203ENST00000401468 MBD3O95983 291 aa10.14□□□□□ -0.79
VPS53-203ENST00000401468 POU3F3P20264 500 aaPredicted RBP10.14□□□□□ -0.79
VPS53-203ENST00000401468 IRS1P35568 1242 aa10.14□□□□□ -0.79
VPS53-203ENST00000401468 RBM10P98175 930 aaKnown RBP10.14□□□□□ -0.79
VPS53-203ENST00000401468 AMPD3Q01432 767 aa10.14□□□□□ -0.79
VPS53-203ENST00000401468 DLX2Q07687 328 aaPredicted RBP10.14□□□□□ -0.79
VPS53-203ENST00000401468 DPYDQ12882 1025 aa10.14□□□□□ -0.79
VPS53-203ENST00000401468 MXD4Q14582 209 aaPredicted RBP10.14□□□□□ -0.79
VPS53-203ENST00000401468 ADGRD2Q7Z7M1 963 aa10.14□□□□□ -0.79
VPS53-203ENST00000401468 GPBP1Q86WP2 473 aa10.14□□□□□ -0.79
VPS53-203ENST00000401468 CEP57L1Q8IYX8 460 aa10.14□□□□□ -0.79
VPS53-203ENST00000401468 RNF169Q8NCN4 708 aa10.14□□□□□ -0.79
VPS53-203ENST00000401468 CNNM3Q8NE01 707 aa10.14□□□□□ -0.79
VPS53-203ENST00000401468 TCP11Q8WWU5 503 aa10.14□□□□□ -0.79
VPS53-203ENST00000401468 KIFAP3Q92845 792 aa10.14□□□□□ -0.79
VPS53-203ENST00000401468 APBB2Q92870 758 aa10.14□□□□□ -0.79
VPS53-203ENST00000401468 DRC1Q96MC2 740 aa10.14□□□□□ -0.79
VPS53-203ENST00000401468 FIZ1Q96SL8 496 aa10.14□□□□□ -0.79
VPS53-203ENST00000401468 ADAM2Q99965 735 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 100.6 ms