RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 TSC22D4Q9Y3Q8 395 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 PCDHGB6Q9Y5F9 930 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 NPFFR2Q9Y5X5 522 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 ITIH6Q6UXX5 1313 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 SETD1BQ9UPS6 1966 aaKnown RBP4.83□□□□□ -1.64
HMGB1-204ENST00000399489 ARNTLO00327 626 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 GAS7O60861 476 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 FSHBP01225 129 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 CD4P01730 458 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 CHGBP05060 677 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 PYGLP06737 847 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 IFIT1P09914 478 aaKnown RBP4.83□□□□□ -1.64
HMGB1-204ENST00000399489 KCNA6P17658 529 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 AKAP5P24588 427 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 GDF5P43026 501 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 STT3AP46977 705 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 MLLT6P55198 1093 aaPredicted RBP4.83□□□□□ -1.64
HMGB1-204ENST00000399489 SESN3P58005 492 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 APBA1Q02410 837 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 HS1BP3Q53T59 392 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 PRR16Q569H4 304 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 VPS53Q5VIR6 699 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 AGAP9Q5VTM2 703 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 CCDC149Q6ZUS6 474 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 OVCH2Q7RTZ1 564 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 PTRH1Q86Y79 214 aaKnown RBP4.83□□□□□ -1.64
HMGB1-204ENST00000399489 SH3RF3Q8TEJ3 882 aaPredicted RBP4.83□□□□□ -1.64
HMGB1-204ENST00000399489 DIS3LQ8TF46 1054 aaKnown RBP4.83□□□□□ -1.64
HMGB1-204ENST00000399489 DCAF4Q8WV16 495 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 ZBTB10Q96DT7 871 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 TEKT5Q96M29 485 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 PPP4R1LQ9P1A2 415 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 TPCN1Q9ULQ1 816 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 POLHQ9Y253 713 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 AFG3L2Q9Y4W6 797 aa4.83□□□□□ -1.64
HMGB1-204ENST00000399489 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.82□□□□□ -1.64
HMGB1-204ENST00000399489 KLHL33A6NCF5 533 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 FAM227AF5H4B4 570 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 EYA2O00167 538 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 SLC27A2O14975 620 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 B4GALT4O60513 344 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 GNAT1P11488 350 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 PPM1AP35813 382 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 FAM193AP78312 1265 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 TNFAIP2Q03169 654 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 IFIT5Q13325 482 aaKnown RBP4.82□□□□□ -1.64
HMGB1-204ENST00000399489 LRRC32Q14392 662 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 LLGL1Q15334 1064 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 SMAD2Q15796 467 aaKnown RBP4.82□□□□□ -1.64
HMGB1-204ENST00000399489 KIZQ2M2Z5 673 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 ZNF568Q3ZCX4 644 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 ATAT1Q5SQI0 421 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 FAAH2Q6GMR7 532 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 RETSATQ6NUM9 610 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 CYP26C1Q6V0L0 522 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 RALYLQ86SE5 291 aaKnown RBP4.82□□□□□ -1.64
HMGB1-204ENST00000399489 DDX53Q86TM3 631 aaKnown RBP4.82□□□□□ -1.64
HMGB1-204ENST00000399489 C11orf74Q86VG3 221 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 ANKRD18AQ8IVF6 992 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 CHCHD4Q8N4Q1 142 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 PIP4K2CQ8TBX8 421 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 IGDCC4Q8TDY8 1250 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 ZCCHC14Q8WYQ9 949 aaKnown RBP4.82□□□□□ -1.64
HMGB1-204ENST00000399489 C1orf159Q96HA4 380 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 TSPAN18Q96SJ8 248 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 TBCBQ99426 244 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 ZFYVE21Q9BQ24 234 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 PHF20Q9BVI0 1012 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 SSBP3Q9BWW4 388 aaPredicted RBP4.82□□□□□ -1.64
HMGB1-204ENST00000399489 APOL5Q9BWW9 433 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 KLC2Q9H0B6 622 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 TBC1D22BQ9NU19 505 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 THG1LQ9NWX6 298 aaKnown RBP4.82□□□□□ -1.64
HMGB1-204ENST00000399489 GPRC5BQ9NZH0 403 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 TRAF6Q9Y4K3 522 aa4.82□□□□□ -1.64
HMGB1-204ENST00000399489 TMCC2O75069 709 aa4.81□□□□□ -1.64
HMGB1-204ENST00000399489 H2AFYO75367 372 aaKnown RBP4.81□□□□□ -1.64
HMGB1-204ENST00000399489 ENO2P09104 434 aaPredicted RBP4.81□□□□□ -1.64
HMGB1-204ENST00000399489 TSPAN7P41732 249 aa4.81□□□□□ -1.64
HMGB1-204ENST00000399489 SELENOPP49908 381 aa4.81□□□□□ -1.64
HMGB1-204ENST00000399489 OCRLQ01968 901 aa4.81□□□□□ -1.64
HMGB1-204ENST00000399489 GRIN1Q05586 938 aa4.81□□□□□ -1.64
HMGB1-204ENST00000399489 G3BP1Q13283 466 aaKnown RBP eCLIP4.81□□□□□ -1.64
HMGB1-204ENST00000399489 TERF2Q15554 542 aa4.81□□□□□ -1.64
HMGB1-204ENST00000399489 DGKKQ5KSL6 1271 aa4.81□□□□□ -1.64
HMGB1-204ENST00000399489 GPATCH4Q5T3I0 446 aaKnown RBP4.81□□□□□ -1.64
HMGB1-204ENST00000399489 SPATA1Q5VX52 437 aa4.81□□□□□ -1.64
HMGB1-204ENST00000399489 DENND5AQ6IQ26 1287 aa4.81□□□□□ -1.64
HMGB1-204ENST00000399489 CHTF18Q8WVB6 975 aa4.81□□□□□ -1.64
HMGB1-204ENST00000399489 RSPH1Q8WYR4 309 aa4.81□□□□□ -1.64
HMGB1-204ENST00000399489 MBD6Q96DN6 1003 aa4.81□□□□□ -1.64
HMGB1-204ENST00000399489 UBXN10Q96LJ8 280 aa4.81□□□□□ -1.64
HMGB1-204ENST00000399489 RIPOR3Q96MK2 946 aa4.81□□□□□ -1.64
HMGB1-204ENST00000399489 JAM3Q9BX67 310 aa4.81□□□□□ -1.64
HMGB1-204ENST00000399489 AP1M1Q9BXS5 423 aa4.81□□□□□ -1.64
HMGB1-204ENST00000399489 KRTAP3-1Q9BYR8 98 aa4.81□□□□□ -1.64
HMGB1-204ENST00000399489 VPS11Q9H270 941 aa4.81□□□□□ -1.64
HMGB1-204ENST00000399489 UNC45AQ9H3U1 944 aa4.81□□□□□ -1.64
HMGB1-204ENST00000399489 PRKRIP1Q9H875 184 aaPredicted RBP4.81□□□□□ -1.64
HMGB1-204ENST00000399489 CDC23Q9UJX2 597 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms