RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 ANO9A1A5B4 782 aa7.69□□□□□ -1.18
LIMA1-202ENST00000394943 H0YGN5 161 aa7.69□□□□□ -1.18
LIMA1-202ENST00000394943 FSCN2O14926 492 aa7.69□□□□□ -1.18
LIMA1-202ENST00000394943 EXTL3O43909 919 aa7.69□□□□□ -1.18
LIMA1-202ENST00000394943 OFD1O75665 1012 aa7.69□□□□□ -1.18
LIMA1-202ENST00000394943 FGBP02675 491 aa7.69□□□□□ -1.18
LIMA1-202ENST00000394943 RAG1P15918 1043 aa7.69□□□□□ -1.18
LIMA1-202ENST00000394943 CD44P16070 742 aaKnown RBP7.69□□□□□ -1.18
LIMA1-202ENST00000394943 CCNE1P24864 410 aa7.69□□□□□ -1.18
LIMA1-202ENST00000394943 IGBP1P78318 339 aa7.69□□□□□ -1.18
LIMA1-202ENST00000394943 CD300LGQ6UXG3 332 aa7.69□□□□□ -1.18
LIMA1-202ENST00000394943 AGMOQ6ZNB7 445 aa7.69□□□□□ -1.18
LIMA1-202ENST00000394943 GRAMD1CQ8IYS0 662 aa7.69□□□□□ -1.18
LIMA1-202ENST00000394943 DBF4BQ8NFT6 615 aa7.69□□□□□ -1.18
LIMA1-202ENST00000394943 ASB7Q9H672 318 aa7.69□□□□□ -1.18
LIMA1-202ENST00000394943 LZTS1Q9Y250 596 aa7.69□□□□□ -1.18
LIMA1-202ENST00000394943 LRRC10BA6NIK2 292 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 ANKRD63C9JTQ0 380 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 K7ERI5 159 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 OGTO15294 1046 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 SLC16A4O15374 487 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 NMT1P30419 496 aaKnown RBP7.68□□□□□ -1.18
LIMA1-202ENST00000394943 PRPF4BQ13523 1007 aaKnown RBP7.68□□□□□ -1.18
LIMA1-202ENST00000394943 PSMD6Q15008 389 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 FILIP1Q7Z7B0 1213 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 BRSK2Q8IWQ3 736 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 MYCT1Q8N699 235 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 NLRP7Q8WX94 980 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 SMARCE1Q969G3 411 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 UROC1Q96N76 676 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 PLVAPQ9BX97 442 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 HSD3B7Q9H2F3 369 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 C2CD2Q9Y426 696 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 DAAM1Q9Y4D1 1078 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 KIF26AQ9ULI4 1882 aaPredicted RBP7.68□□□□□ -1.18
LIMA1-202ENST00000394943 IKBKBO14920 756 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 IL18RAPO95256 599 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 FAM47CQ5HY64 1035 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 C1orf220Q5T0J3 134 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 CDKAL1Q5VV42 579 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 DPY19L2P1Q6NXN4 242 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 GLIS3Q8NEA6 775 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 NOC3LQ8WTT2 800 aaKnown RBP7.68□□□□□ -1.18
LIMA1-202ENST00000394943 PGBD4Q96DM1 585 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 TMEM117Q9H0C3 514 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 NUP62CLQ9H1M0 184 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 EXOC1Q9NV70 894 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 PCDH10Q9P2E7 1040 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 COQ4Q9Y3A0 265 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 IPPQ9Y573 584 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 CENPFP49454 3210 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 TRIP11Q15643 1979 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 B4GALT5O43286 388 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 GJB5O95377 273 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 AMHP03971 560 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 CLTAP09496 248 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 PRCPP42785 496 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 ASIC1P78348 528 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 NOLC1Q14978 699 aaKnown RBP eCLIP7.68□□□□□ -1.18
LIMA1-202ENST00000394943 CLLU1OSQ5K130 101 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 TDHQ8IZJ6 230 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 MYOCDQ8IZQ8 938 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 METTL13Q8N6R0 699 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 ENOX1Q8TC92 643 aaKnown RBP7.68□□□□□ -1.18
LIMA1-202ENST00000394943 P2RX5Q93086 422 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 PLIN2Q99541 437 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 RHOBTB2Q9BYZ6 727 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 RWDD3Q9Y3V2 267 aa7.68□□□□□ -1.18
LIMA1-202ENST00000394943 A0A087WWV3 80 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 K7ENM7 598 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 NPTXRO95502 500 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 STAG3L1P0CL83 205 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 ZNF18P17022 549 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 AP3M2P53677 418 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 SURF1Q15526 300 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 HERC4Q5GLZ8 1057 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-202ENST00000394943 ZNF365Q70YC5 407 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 PDILTQ8N807 584 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 SCLYQ96I15 445 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 SH2D3AQ9BRG2 576 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 BLZF1Q9H2G9 400 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 SUGCTQ9HAC7 445 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 LMCD1Q9NZU5 365 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 POU2F2P09086 479 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 GHRP10912 638 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 PLCB3Q01970 1234 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 NCAPHQ15003 741 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 EEF1DP3Q658K8 133 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 HERC6Q8IVU3 1022 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 EIF2AQ9BY44 585 aaKnown RBP7.67□□□□□ -1.18
LIMA1-202ENST00000394943 GBP3Q9H0R5 595 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 THAP9Q9H5L6 903 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 MRPL44Q9H9J2 332 aaKnown RBP7.67□□□□□ -1.18
LIMA1-202ENST00000394943 KANSL3Q9P2N6 904 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 NOD1Q9Y239 953 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 PCDHB2Q9Y5E7 798 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 PTGESO14684 152 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 P4HA2O15460 535 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 PLXNA3P51805 1871 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 ERVK-21P61565 698 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms