RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 HSPA1AP0DMV8 641 aaKnown RBP12.51□□□□□ -0.41
SYNPO-202ENST00000394243 HSPA1BP0DMV9 641 aaKnown RBP12.51□□□□□ -0.41
SYNPO-202ENST00000394243 EIF2B2P49770 351 aaKnown RBP12.51□□□□□ -0.41
SYNPO-202ENST00000394243 LVRNQ6Q4G3 990 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 IFNEQ86WN2 208 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 LRRC34Q8IZ02 419 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 TMEM35BQ8NCS4 154 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 HNRNPLLQ8WVV9 542 aaKnown RBP12.51□□□□□ -0.41
SYNPO-202ENST00000394243 IP6K2Q9UHH9 426 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 PHF2O75151 1096 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 CAND2O75155 1236 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 CALB1P05937 261 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 PPARGP37231 505 aaPredicted RBP12.51□□□□□ -0.41
SYNPO-202ENST00000394243 COASYQ13057 564 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 DLGAP5Q15398 846 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 TMEM270Q6UE05 265 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 CCDC81Q6ZN84 652 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 MXD3Q9BW11 206 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 SARS2Q9NP81 518 aaKnown RBP12.51□□□□□ -0.41
SYNPO-202ENST00000394243 GPR108Q9NPR9 543 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 HAO1Q9UJM8 370 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 TNRQ92752 1358 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 CIAO1O76071 339 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 ALCAMQ13740 583 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 C1orf228Q6PIY5 440 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 ARMCX6Q7L4S7 300 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 C9orf72Q96LT7 481 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 DGKIO75912 1065 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 TRIM25Q14258 630 aaKnown RBP12.51□□□□□ -0.41
SYNPO-202ENST00000394243 ABCB5Q2M3G0 1257 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 P3H1Q32P28 736 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 MTERF2Q49AM1 385 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 SYCP2LQ5T4T6 812 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 HEATR6Q6AI08 1181 aaKnown RBP12.51□□□□□ -0.41
SYNPO-202ENST00000394243 SHC4Q6S5L8 630 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 KDM7AQ6ZMT4 941 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 ZBED2Q9BTP6 218 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 FUT8Q9BYC5 575 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 ATP6V0A4Q9HBG4 840 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 TMEM51Q9NW97 253 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 SLC9A2Q9UBY0 812 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 MCM8Q9UJA3 840 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 KCNA2P16389 499 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 KIAA0825Q8IV33 1275 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 PLEKHF1Q96S99 279 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 RBM15Q96T37 977 aaKnown RBP eCLIP12.51□□□□□ -0.41
SYNPO-202ENST00000394243 EPAS1Q99814 870 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 MSTO1Q9BUK6 570 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 HERC5Q9UII4 1024 aaKnown RBP12.51□□□□□ -0.41
SYNPO-202ENST00000394243 AP4S1Q9Y587 144 aa12.51□□□□□ -0.41
SYNPO-202ENST00000394243 MIS18BP1Q6P0N0 1132 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 PSMC3IPQ9P2W1 217 aaPredicted RBP12.5□□□□□ -0.41
SYNPO-202ENST00000394243 SEL1LQ9UBV2 794 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 A2MP01023 1474 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 POTEMA6NI47 508 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 ABCD1P33897 745 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 PLEKHA7Q6IQ23 1121 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 PNKPQ96T60 521 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 SCN3BQ9NY72 215 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 TSR3Q9UJK0 312 aaKnown RBP12.5□□□□□ -0.41
SYNPO-202ENST00000394243 CYP2D7A0A087X1C5 515 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 LINC00854A0A1B0GVQ3 168 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 MYO1GB0I1T2 1018 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 CDH2P19022 906 aaPredicted RBP12.5□□□□□ -0.41
SYNPO-202ENST00000394243 OSBPP22059 807 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 TBL3Q12788 808 aaKnown RBP12.5□□□□□ -0.41
SYNPO-202ENST00000394243 MKRN4PQ13434 485 aaPredicted RBP12.5□□□□□ -0.41
SYNPO-202ENST00000394243 WLSQ5T9L3 541 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 SULF1Q8IWU6 871 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 OXER1Q8TDS5 423 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 OSBPL8Q9BZF1 889 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 LOC100653049A0A140TA62 436 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 hCG_1984214I3L0E3 225 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 KRT34O76011 436 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 ATP6V1G2O95670 118 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 PI16Q6UXB8 463 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 ZNF713Q8N859 430 aaPredicted RBP12.5□□□□□ -0.41
SYNPO-202ENST00000394243 PPHLN1Q8NEY8 458 aaKnown RBP12.5□□□□□ -0.41
SYNPO-202ENST00000394243 ASZ1Q8WWH4 475 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 MTERF3Q96E29 417 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 ETAA1Q9NY74 926 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 IQCA1LA6NCM1 817 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 FAM200BP0CF97 657 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 DNAJC3Q13217 504 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 ITIH4Q14624 930 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 ANO4Q32M45 955 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 CASS4Q9NQ75 786 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 PTPRTO14522 1441 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 A0A1B0GTH6 734 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 KRT72Q14CN4 511 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 RAD9BQ6WBX8 426 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 RAD54LQ92698 747 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 MPP4Q96JB8 637 aa12.5□□□□□ -0.41
SYNPO-202ENST00000394243 PFASO15067 1338 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 EFCAB14O75071 495 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 KRT7P08729 469 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 SRGAP2CP0DJJ0 459 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 SYDE1Q6ZW31 735 aaPredicted RBP12.49□□□□□ -0.41
SYNPO-202ENST00000394243 METTL23Q86XA0 190 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 TRIM8Q9BZR9 551 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms