RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 ARHGAP4P98171 946 aa11.98□□□□□ -0.49
CUX1-204ENST00000393824 KCNMA1Q12791 1236 aa11.98□□□□□ -0.49
CUX1-204ENST00000393824 FSTL1Q12841 308 aa11.98□□□□□ -0.49
CUX1-204ENST00000393824 PDCD2Q16342 344 aaPredicted RBP11.98□□□□□ -0.49
CUX1-204ENST00000393824 SLC5A9Q2M3M2 681 aa11.98□□□□□ -0.49
CUX1-204ENST00000393824 FAM133BQ5BKY9 247 aaKnown RBP11.98□□□□□ -0.49
CUX1-204ENST00000393824 ANKRD20A2Q5SQ80 823 aa11.98□□□□□ -0.49
CUX1-204ENST00000393824 ANKRD20A1Q5TYW2 823 aa11.98□□□□□ -0.49
CUX1-204ENST00000393824 SFMBT2Q5VUG0 894 aa11.98□□□□□ -0.49
CUX1-204ENST00000393824 ANKRD20A3Q5VUR7 823 aa11.98□□□□□ -0.49
CUX1-204ENST00000393824 SLC30A9Q6PML9 568 aa11.98□□□□□ -0.49
CUX1-204ENST00000393824 APLFQ8IW19 511 aaPredicted RBP11.98□□□□□ -0.49
CUX1-204ENST00000393824 SMC1BQ8NDV3 1235 aa11.98□□□□□ -0.49
CUX1-204ENST00000393824 SYTL5Q8TDW5 730 aaPredicted RBP11.98□□□□□ -0.49
CUX1-204ENST00000393824 LENG9Q96B70 501 aa11.98□□□□□ -0.49
CUX1-204ENST00000393824 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.98□□□□□ -0.491e-6■■■□□ 15.3
CUX1-204ENST00000393824 ARHGEF3Q9NR81 526 aa11.98□□□□□ -0.49
CUX1-204ENST00000393824 MRPL11Q9Y3B7 192 aaKnown RBP11.98□□□□□ -0.49
CUX1-204ENST00000393824 PGRMC1O00264 195 aaKnown RBP11.98□□□□□ -0.49
CUX1-204ENST00000393824 ABLIM1O14639 778 aa11.98□□□□□ -0.49
CUX1-204ENST00000393824 POLR2MP0CAP2 368 aa11.98□□□□□ -0.49
CUX1-204ENST00000393824 BAATQ14032 418 aaPredicted RBP11.98□□□□□ -0.49
CUX1-204ENST00000393824 FASTKD5Q7L8L6 764 aaKnown RBP11.98□□□□□ -0.49
CUX1-204ENST00000393824 MFN1Q8IWA4 741 aa11.98□□□□□ -0.49
CUX1-204ENST00000393824 TAAR1Q96RJ0 339 aa11.98□□□□□ -0.49
CUX1-204ENST00000393824 TSG101Q99816 390 aa11.98□□□□□ -0.49
CUX1-204ENST00000393824 ELAC2Q9BQ52 826 aaKnown RBP11.98□□□□□ -0.49
CUX1-204ENST00000393824 YIPF3Q9GZM5 350 aa11.98□□□□□ -0.49
CUX1-204ENST00000393824 SPATC1LQ9H0A9 340 aa11.98□□□□□ -0.49
CUX1-204ENST00000393824 PORCNQ9H237 461 aa11.98□□□□□ -0.49
CUX1-204ENST00000393824 LRRC4CQ9HCJ2 640 aa11.98□□□□□ -0.49
CUX1-204ENST00000393824 TLL2Q9Y6L7 1015 aa11.98□□□□□ -0.49
CUX1-204ENST00000393824 UNCXA6NJT0 531 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 SPDYE3A6NKU9 549 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 ATP2A1O14983 1001 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 SNX3O60493 162 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 UBOX5O94941 541 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 ATP2A2P16615 1042 aaKnown RBP11.97□□□□□ -0.49
CUX1-204ENST00000393824 CDC25CP30307 473 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 SREBF1P36956 1147 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 GTF2A2P52657 109 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 BNIP1Q12981 228 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 C10orf76Q5T2E6 689 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 RGMBQ6NW40 437 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 RASGEF1CQ8N431 466 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 HAS1Q92839 578 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 PLIN2Q99541 437 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 NSRP1Q9H0G5 558 aaKnown RBP11.97□□□□□ -0.49
CUX1-204ENST00000393824 DDX47Q9H0S4 455 aaKnown RBP11.97□□□□□ -0.49
CUX1-204ENST00000393824 ABCF3Q9NUQ8 709 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 ABT1Q9ULW3 272 aaKnown RBP11.97□□□□□ -0.49
CUX1-204ENST00000393824 A0A0G2JMZ2 1700 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 MYPNQ86TC9 1320 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 A0A087X0T9 212 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 CEP104O60308 925 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 NOL4O94818 638 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 OAS1P00973 400 aaKnown RBP11.97□□□□□ -0.49
CUX1-204ENST00000393824 FAM228BP0C875 321 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 CETPP11597 493 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 ATP4AP20648 1035 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 PAPOLAP51003 745 aaKnown RBP11.97□□□□□ -0.49
CUX1-204ENST00000393824 CWF19L1Q69YN2 538 aaKnown RBP11.97□□□□□ -0.49
CUX1-204ENST00000393824 CYP4F22Q6NT55 531 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 ANKRD23Q86SG2 305 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 ERICH1Q86X53 443 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 NAF1Q96HR8 494 aaKnown RBP11.97□□□□□ -0.49
CUX1-204ENST00000393824 RAB17Q9H0T7 212 aa11.97□□□□□ -0.49
CUX1-204ENST00000393824 CTDP1Q9Y5B0 961 aaPredicted RBP11.97□□□□□ -0.49
CUX1-204ENST00000393824 ATP8B3O60423 1300 aa11.96□□□□□ -0.49
CUX1-204ENST00000393824 CCDC169A6NNP5 214 aa11.96□□□□□ -0.49
CUX1-204ENST00000393824 WFS1O76024 890 aa11.96□□□□□ -0.49
CUX1-204ENST00000393824 RTN3O95197 1032 aaPredicted RBP11.96□□□□□ -0.49
CUX1-204ENST00000393824 GNA14O95837 355 aa11.96□□□□□ -0.49
CUX1-204ENST00000393824 PDE6CP51160 858 aa11.96□□□□□ -0.49
CUX1-204ENST00000393824 COPS2P61201 443 aa11.96□□□□□ -0.49
CUX1-204ENST00000393824 POU5F1Q01860 360 aaKnown RBP11.96□□□□□ -0.49
CUX1-204ENST00000393824 ROR2Q01974 943 aaKnown RBP11.96□□□□□ -0.49
CUX1-204ENST00000393824 CNTN2Q02246 1040 aa11.96□□□□□ -0.49
CUX1-204ENST00000393824 LMNB2Q03252 620 aa11.96□□□□□ -0.49
CUX1-204ENST00000393824 AP3B2Q13367 1082 aa11.96□□□□□ -0.49
CUX1-204ENST00000393824 RNF207Q6ZRF8 634 aa11.96□□□□□ -0.49
CUX1-204ENST00000393824 LRRC55Q6ZSA7 311 aa11.96□□□□□ -0.49
CUX1-204ENST00000393824 ASRGL1Q7L266 308 aa11.96□□□□□ -0.49
CUX1-204ENST00000393824 LRRC57Q8N9N7 239 aa11.96□□□□□ -0.49
CUX1-204ENST00000393824 DRAXINQ8NBI3 349 aaPredicted RBP11.96□□□□□ -0.49
CUX1-204ENST00000393824 MTMR9Q96QG7 549 aa11.96□□□□□ -0.49
CUX1-204ENST00000393824 MMTAG2Q9BU76 263 aaKnown RBP11.96□□□□□ -0.49
CUX1-204ENST00000393824 ECT2Q9H8V3 914 aa11.96□□□□□ -0.49
CUX1-204ENST00000393824 INTS9Q9NV88 658 aaKnown RBP11.96□□□□□ -0.49
CUX1-204ENST00000393824 CYP39A1Q9NYL5 469 aa11.96□□□□□ -0.49
CUX1-204ENST00000393824 AMACRQ9UHK6 382 aa11.96□□□□□ -0.49
CUX1-204ENST00000393824 LRRC42Q9Y546 428 aa11.96□□□□□ -0.49
CUX1-204ENST00000393824 IGLV3-22A0A075B6J6 115 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 KRIT1O00522 736 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 KRT16P08779 473 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 EIF2AK2P19525 551 aaKnown RBP11.95□□□□□ -0.5
CUX1-204ENST00000393824 MSH2P43246 934 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 FXR2P51116 673 aaKnown RBP eCLIP11.95□□□□□ -0.5
CUX1-204ENST00000393824 OAZ1P54368 228 aa11.95□□□□□ -0.5
CUX1-204ENST00000393824 GHRHRQ02643 423 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms