RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 LMO3Q8TAP4 145 aa17.5■□□□□ 0.39
NKX3-1-201ENST00000380871 ATG4CQ96DT6 458 aa17.5■□□□□ 0.39
NKX3-1-201ENST00000380871 POP1Q99575 1024 aaKnown RBP17.5■□□□□ 0.39
NKX3-1-201ENST00000380871 FAM129AQ9BZQ8 928 aa17.5■□□□□ 0.39
NKX3-1-201ENST00000380871 RPAP3Q9H6T3 665 aaPredicted RBP17.5■□□□□ 0.39
NKX3-1-201ENST00000380871 ANKRD62A6NC57 917 aa17.5■□□□□ 0.39
NKX3-1-201ENST00000380871 CCDC169A6NNP5 214 aa17.5■□□□□ 0.39
NKX3-1-201ENST00000380871 FOXO6A8MYZ6 492 aa17.5■□□□□ 0.39
NKX3-1-201ENST00000380871 PEX10O60683 326 aa17.5■□□□□ 0.39
NKX3-1-201ENST00000380871 PPP2R5CQ13362 524 aa17.5■□□□□ 0.39
NKX3-1-201ENST00000380871 MTMR1Q13613 665 aa17.5■□□□□ 0.39
NKX3-1-201ENST00000380871 DLK2Q6UY11 383 aa17.5■□□□□ 0.39
NKX3-1-201ENST00000380871 ATXN2LQ8WWM7 1075 aaKnown RBP17.5■□□□□ 0.39
NKX3-1-201ENST00000380871 CCT6BQ92526 530 aa17.5■□□□□ 0.39
NKX3-1-201ENST00000380871 HVCN1Q96D96 273 aa17.5■□□□□ 0.39
NKX3-1-201ENST00000380871 FAM84AQ96KN4 292 aa17.5■□□□□ 0.39
NKX3-1-201ENST00000380871 AGPAT1Q99943 283 aa17.5■□□□□ 0.39
NKX3-1-201ENST00000380871 ZNF536O15090 1300 aa17.49■□□□□ 0.39
NKX3-1-201ENST00000380871 ICAM1P05362 532 aa17.49■□□□□ 0.39
NKX3-1-201ENST00000380871 BFSP1Q12934 665 aa17.49■□□□□ 0.39
NKX3-1-201ENST00000380871 DALRD3Q5D0E6 543 aaKnown RBP17.49■□□□□ 0.39
NKX3-1-201ENST00000380871 SCLT1Q96NL6 688 aa17.49■□□□□ 0.39
NKX3-1-201ENST00000380871 ZNF317Q96PQ6 595 aaPredicted RBP17.49■□□□□ 0.39
NKX3-1-201ENST00000380871 RMDN3Q96TC7 470 aa17.49■□□□□ 0.39
NKX3-1-201ENST00000380871 CCDC113Q9H0I3 377 aa17.49■□□□□ 0.39
NKX3-1-201ENST00000380871 ZHX2Q9Y6X8 837 aa17.49■□□□□ 0.39
NKX3-1-201ENST00000380871 ATP8B3O60423 1300 aa17.49■□□□□ 0.39
NKX3-1-201ENST00000380871 SLC16A4O15374 487 aa17.49■□□□□ 0.39
NKX3-1-201ENST00000380871 GCLMP48507 274 aa17.49■□□□□ 0.39
NKX3-1-201ENST00000380871 GMPSP49915 693 aaPredicted RBP17.49■□□□□ 0.39
NKX3-1-201ENST00000380871 PEX3P56589 373 aa17.49■□□□□ 0.39
NKX3-1-201ENST00000380871 MRPS9P82933 396 aaKnown RBP17.49■□□□□ 0.39
NKX3-1-201ENST00000380871 PPP3CAQ08209 521 aa17.49■□□□□ 0.39
NKX3-1-201ENST00000380871 FAM102BQ5T8I3 360 aa17.49■□□□□ 0.39
NKX3-1-201ENST00000380871 AGBL3Q8NEM8 1001 aa17.49■□□□□ 0.39
NKX3-1-201ENST00000380871 PRMT1Q99873 361 aaKnown RBP17.49■□□□□ 0.39
NKX3-1-201ENST00000380871 DMAC2Q9NW81 257 aa17.49■□□□□ 0.39
NKX3-1-201ENST00000380871 GGT7Q9UJ14 662 aa17.49■□□□□ 0.39
NKX3-1-201ENST00000380871 RIPK3Q9Y572 518 aa17.49■□□□□ 0.39
NKX3-1-201ENST00000380871 EMSYQ7Z589 1322 aa17.49■□□□□ 0.39
NKX3-1-201ENST00000380871 COMTP21964 271 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 PLCB4Q15147 1175 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 TKFCQ3LXA3 575 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 XKR9Q5GH70 373 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 CCDC25Q86WR0 208 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 LRRC34Q8IZ02 419 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 RPUSD2Q8IZ73 545 aaKnown RBP17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 PCDHB18PQ96TA0 734 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 DBR1Q9UK59 544 aaKnown RBP17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 PYGMP11217 842 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 MAP2K2P36507 400 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 CDR1P51861 262 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 UGCGQ16739 394 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 ARHGEF16Q5VV41 709 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 HOOK3Q86VS8 718 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 CEP57Q86XR8 500 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 DAW1Q8N136 415 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 SYTL5Q8TDW5 730 aaPredicted RBP17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 CCDC127Q96BQ5 260 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 DEFB129Q9H1M3 183 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 HACL1Q9UJ83 578 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 USP20Q9Y2K6 914 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 NUDT17P0C025 328 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 EIF3BP55884 814 aaKnown RBP17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 BAATQ14032 418 aaPredicted RBP17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 KIF22Q14807 665 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 FAM83AQ86UY5 434 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 PARP9Q8IXQ6 854 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 CLEC4DQ8WXI8 215 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 MYCBPQ99417 103 aaPredicted RBP17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 CBWD1Q9BRT8 395 aa17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 ACTR5Q9H9F9 607 aaPredicted RBP17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 TPX2Q9ULW0 747 aaKnown RBP17.48■□□□□ 0.39
NKX3-1-201ENST00000380871 RGS16O15492 202 aaPredicted RBP17.47■□□□□ 0.39
NKX3-1-201ENST00000380871 PHF2O75151 1096 aa17.47■□□□□ 0.39
NKX3-1-201ENST00000380871 PTGER2P43116 358 aa17.47■□□□□ 0.39
NKX3-1-201ENST00000380871 DRP2Q13474 957 aa17.47■□□□□ 0.39
NKX3-1-201ENST00000380871 CCDC137Q6PK04 289 aaKnown RBP17.47■□□□□ 0.39
NKX3-1-201ENST00000380871 OTUD6AQ7L8S5 288 aa17.47■□□□□ 0.39
NKX3-1-201ENST00000380871 CNOT7Q9UIV1 285 aaKnown RBP17.47■□□□□ 0.39
NKX3-1-201ENST00000380871 TELO2Q9Y4R8 837 aa17.47■□□□□ 0.39
NKX3-1-201ENST00000380871 CHUKO15111 745 aa17.47■□□□□ 0.39
NKX3-1-201ENST00000380871 SGPL1O95470 568 aa17.47■□□□□ 0.39
NKX3-1-201ENST00000380871 HMGCS2P54868 508 aa17.47■□□□□ 0.39
NKX3-1-201ENST00000380871 GSCP56915 257 aaPredicted RBP17.47■□□□□ 0.39
NKX3-1-201ENST00000380871 E2F5Q15329 346 aa17.47■□□□□ 0.39
NKX3-1-201ENST00000380871 C3orf20Q8ND61 904 aa17.47■□□□□ 0.39
NKX3-1-201ENST00000380871 ZSWIM1Q9BR11 485 aa17.47■□□□□ 0.39
NKX3-1-201ENST00000380871 MKNK1Q9BUB5 465 aa17.47■□□□□ 0.39
NKX3-1-201ENST00000380871 GEMIN8Q9NWZ8 242 aaKnown RBP17.47■□□□□ 0.39
NKX3-1-201ENST00000380871 MMP13P45452 471 aa17.46■□□□□ 0.39
NKX3-1-201ENST00000380871 LRRC14Q15048 493 aa17.46■□□□□ 0.39
NKX3-1-201ENST00000380871 RNF207Q6ZRF8 634 aa17.46■□□□□ 0.39
NKX3-1-201ENST00000380871 DHX37Q8IY37 1157 aaKnown RBP17.46■□□□□ 0.39
NKX3-1-201ENST00000380871 PLEKHO2Q8TD55 490 aa17.46■□□□□ 0.39
NKX3-1-201ENST00000380871 CNOT10Q9H9A5 744 aaKnown RBP17.46■□□□□ 0.39
NKX3-1-201ENST00000380871 PCDHA3Q9Y5H8 950 aa17.46■□□□□ 0.39
NKX3-1-201ENST00000380871 STK24Q9Y6E0 443 aa17.46■□□□□ 0.39
NKX3-1-201ENST00000380871 CALCAP01258 141 aa17.46■□□□□ 0.39
NKX3-1-201ENST00000380871 DHX34Q14147 1143 aaKnown RBP17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms