RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 IP6K2Q9UHH9 426 aa12.27□□□□□ -0.44
VPS13A-205ENST00000376636 PKN2Q16513 984 aaKnown RBP12.27□□□□□ -0.44
VPS13A-205ENST00000376636 ARMC3Q5W041 872 aa12.27□□□□□ -0.44
VPS13A-205ENST00000376636 PPM1NQ8N819 430 aa12.27□□□□□ -0.44
VPS13A-205ENST00000376636 ASAP3Q8TDY4 903 aa12.27□□□□□ -0.44
VPS13A-205ENST00000376636 MTHFD1LQ6UB35 978 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 SPATA21Q7Z572 469 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 PRMT1Q99873 361 aaKnown RBP12.27□□□□□ -0.45
VPS13A-205ENST00000376636 DDX50Q9BQ39 737 aaKnown RBP12.27□□□□□ -0.45
VPS13A-205ENST00000376636 CENPXA8MT69 81 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 Q3C1V9 767 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 USP39Q53GS9 565 aaKnown RBP12.27□□□□□ -0.45
VPS13A-205ENST00000376636 PASD1Q8IV76 773 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 PFASO15067 1338 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 STX7O15400 261 aaKnown RBP12.27□□□□□ -0.45
VPS13A-205ENST00000376636 KLHL18O94889 574 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 UGP2Q16851 508 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 ZNF667Q5HYK9 610 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 TRIM72Q6ZMU5 477 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 CMTR1Q8N1G2 835 aaKnown RBP12.27□□□□□ -0.45
VPS13A-205ENST00000376636 DCPSQ96C86 337 aaKnown RBP12.27□□□□□ -0.45
VPS13A-205ENST00000376636 C17orf80Q9BSJ5 609 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 RHBDL2Q9NX52 303 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 E7ENQ6 273 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 PPIP5K2O43314 1243 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 TNFAIP2Q03169 654 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 INAQ16352 499 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 ZNF699Q32M78 642 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 WDR48Q8TAF3 677 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 HES6Q96HZ4 224 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 DNAJC7Q99615 494 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 KIFC1Q9BW19 673 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 NDUFA13Q9P0J0 144 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 K7ERI5 159 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 GUCA1AP43080 201 aaPredicted RBP12.27□□□□□ -0.45
VPS13A-205ENST00000376636 EAPPQ56P03 285 aaPredicted RBP12.27□□□□□ -0.45
VPS13A-205ENST00000376636 RNF135Q8IUD6 432 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 HIC2Q96JB3 615 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 ADGRA3Q8IWK6 1321 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 AP1S2P56377 157 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 EFHC2Q5JST6 749 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 ZNF467Q7Z7K2 595 aaPredicted RBP12.27□□□□□ -0.45
VPS13A-205ENST00000376636 OR6P1Q8NGX9 317 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 ARL8AQ96BM9 186 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 NUP85Q9BW27 656 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 EMILIN3Q9NT22 766 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 MAN1B1Q9UKM7 699 aa12.27□□□□□ -0.45
VPS13A-205ENST00000376636 UBA6A0AVT1 1052 aaPredicted RBP12.26□□□□□ -0.45
VPS13A-205ENST00000376636 C1DQ13901 141 aaKnown RBP12.26□□□□□ -0.45
VPS13A-205ENST00000376636 LLGL1Q15334 1064 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 SULF1Q8IWU6 871 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 LRRC39Q96DD0 335 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 CCDC87Q9NVE4 849 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 TUBGCP4Q9UGJ1 667 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 SPATA2Q9UM82 520 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 ENO4A6NNW6 628 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 SUPT3HB4E1H0 165 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 PRKG1Q13976 671 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 MICALL2Q8IY33 904 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 DNAJC9Q8WXX5 260 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 CCDC17Q96LX7 622 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 TCP11X1B4DZS4 312 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 CLIC2O15247 247 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 PURAQ00577 322 aaKnown RBP12.26□□□□□ -0.45
VPS13A-205ENST00000376636 STAT4Q14765 748 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 PHKG1Q16816 387 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 SCARA5Q6ZMJ2 495 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 ZNF594Q96JF6 807 aaPredicted RBP12.26□□□□□ -0.45
VPS13A-205ENST00000376636 ARL6IP4Q66PJ3 421 aaKnown RBP12.26□□□□□ -0.45
VPS13A-205ENST00000376636 SLC9A2Q9UBY0 812 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 MTMR6Q9Y217 621 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 ABCA5Q8WWZ7 1642 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 KRT6AP02538 564 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 IL6P05231 212 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 OSBPP22059 807 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 SYTL3Q4VX76 610 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 SMYD4Q8IYR2 804 aaPredicted RBP12.26□□□□□ -0.45
VPS13A-205ENST00000376636 TMEM35BQ8NCS4 154 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 KLHL25Q9H0H3 589 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 ABHD10Q9NUJ1 306 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 FANCAO15360 1455 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 LOC102724159A0A0B4J2E5 919 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 PDE5AO76074 875 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 PDIA2Q13087 525 aaKnown RBP12.26□□□□□ -0.45
VPS13A-205ENST00000376636 PWP2Q15269 919 aaKnown RBP12.26□□□□□ -0.45
VPS13A-205ENST00000376636 EFL1Q7Z2Z2 1120 aaKnown RBP12.26□□□□□ -0.45
VPS13A-205ENST00000376636 NARS2Q96I59 477 aaKnown RBP12.26□□□□□ -0.45
VPS13A-205ENST00000376636 STK32BQ9NY57 414 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 MFAP3LO75121 409 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 GNAT1P11488 350 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 PPP1R14AQ96A00 147 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 EPC1Q9H2F5 836 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 CDY2AQ9Y6F7 541 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 CDY1Q9Y6F8 540 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 COX10Q12887 443 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 TRIM25Q14258 630 aaKnown RBP12.26□□□□□ -0.45
VPS13A-205ENST00000376636 TAS2R42Q7RTR8 314 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 DPP10Q8N608 796 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 RBBP8Q99708 897 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 SPATA16Q9BXB7 569 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms