RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 SLC9A2Q9UBY0 812 aa22.45■■□□□ 1.18
CCDC88B-203ENST00000359902 DAPK3O43293 454 aa22.45■■□□□ 1.18
CCDC88B-203ENST00000359902 DGAT1O75907 488 aa22.45■■□□□ 1.18
CCDC88B-203ENST00000359902 IRAK1P51617 712 aa22.45■■□□□ 1.18
CCDC88B-203ENST00000359902 SP4Q02446 784 aa22.45■■□□□ 1.18
CCDC88B-203ENST00000359902 CYP24A1Q07973 514 aa22.45■■□□□ 1.18
CCDC88B-203ENST00000359902 ZNF211Q13398 564 aaPredicted RBP22.45■■□□□ 1.18
CCDC88B-203ENST00000359902 ANGEL2Q5VTE6 544 aaKnown RBP22.45■■□□□ 1.18
CCDC88B-203ENST00000359902 NAA35Q5VZE5 725 aa22.45■■□□□ 1.18
CCDC88B-203ENST00000359902 CATSPERGQ6ZRH7 1159 aa22.45■■□□□ 1.18
CCDC88B-203ENST00000359902 FBXL13Q8NEE6 735 aa22.45■■□□□ 1.18
CCDC88B-203ENST00000359902 A1CFQ9NQ94 594 aaKnown RBP22.45■■□□□ 1.18
CCDC88B-203ENST00000359902 MMEP08473 750 aa22.44■■□□□ 1.18
CCDC88B-203ENST00000359902 RTP1P59025 263 aa22.44■■□□□ 1.18
CCDC88B-203ENST00000359902 PTENP60484 403 aa22.44■■□□□ 1.18
CCDC88B-203ENST00000359902 ACTR2P61160 394 aa22.44■■□□□ 1.18
CCDC88B-203ENST00000359902 ABHD15Q6UXT9 468 aa22.44■■□□□ 1.18
CCDC88B-203ENST00000359902 MCPH1Q8NEM0 835 aa22.44■■□□□ 1.18
CCDC88B-203ENST00000359902 NAP1L3Q99457 506 aaPredicted RBP22.44■■□□□ 1.18
CCDC88B-203ENST00000359902 TEX13BQ9BXU2 312 aa22.44■■□□□ 1.18
CCDC88B-203ENST00000359902 RAB20Q9NX57 234 aa22.44■■□□□ 1.18
CCDC88B-203ENST00000359902 CHORDC1Q9UHD1 332 aaPredicted RBP22.44■■□□□ 1.18
CCDC88B-203ENST00000359902 SPATA31C2B4DYI2 1134 aa22.43■■□□□ 1.18
CCDC88B-203ENST00000359902 GTF2H1P32780 548 aa22.43■■□□□ 1.18
CCDC88B-203ENST00000359902 FMO1Q01740 532 aa22.43■■□□□ 1.18
CCDC88B-203ENST00000359902 CDHR1Q96JP9 859 aa22.43■■□□□ 1.18
CCDC88B-203ENST00000359902 CAPS2Q9BXY5 557 aa22.43■■□□□ 1.18
CCDC88B-203ENST00000359902 CYP26B1Q9NR63 512 aa22.43■■□□□ 1.18
CCDC88B-203ENST00000359902 TMOD4Q9NZQ9 345 aa22.43■■□□□ 1.18
CCDC88B-203ENST00000359902 SEPT9Q9UHD8 586 aaPredicted RBP22.43■■□□□ 1.18
CCDC88B-203ENST00000359902 MTA2O94776 668 aa22.43■■□□□ 1.18
CCDC88B-203ENST00000359902 CYP11B1P15538 503 aa22.43■■□□□ 1.18
CCDC88B-203ENST00000359902 HSD17B3P37058 310 aa22.43■■□□□ 1.18
CCDC88B-203ENST00000359902 PRKCEQ02156 737 aa22.43■■□□□ 1.18
CCDC88B-203ENST00000359902 BRDTQ58F21 947 aaPredicted RBP22.43■■□□□ 1.18
CCDC88B-203ENST00000359902 KCTD16Q68DU8 428 aa22.43■■□□□ 1.18
CCDC88B-203ENST00000359902 SV2AQ7L0J3 742 aa22.43■■□□□ 1.18
CCDC88B-203ENST00000359902 TAS1R3Q7RTX0 852 aa22.43■■□□□ 1.18
CCDC88B-203ENST00000359902 SH2D3CQ8N5H7 860 aa22.43■■□□□ 1.18
CCDC88B-203ENST00000359902 NT5C1BQ96P26 610 aa22.43■■□□□ 1.18
CCDC88B-203ENST00000359902 ACAD9Q9H845 621 aa22.43■■□□□ 1.18
CCDC88B-203ENST00000359902 PLAAQ9Y263 795 aa22.43■■□□□ 1.18
CCDC88B-203ENST00000359902 LTBP3Q9NS15 1303 aa22.43■■□□□ 1.18
CCDC88B-203ENST00000359902 MIF4GDA9UHW6 222 aaKnown RBP22.42■■□□□ 1.18
CCDC88B-203ENST00000359902 SORBS3O60504 671 aa22.42■■□□□ 1.18
CCDC88B-203ENST00000359902 SKOR1P84550 965 aa22.42■■□□□ 1.18
CCDC88B-203ENST00000359902 ADAT2Q7Z6V5 191 aaKnown RBP22.42■■□□□ 1.18
CCDC88B-203ENST00000359902 GPD1LQ8N335 351 aa22.42■■□□□ 1.18
CCDC88B-203ENST00000359902 KRT35Q92764 455 aa22.42■■□□□ 1.18
CCDC88B-203ENST00000359902 RPS6KC1Q96S38 1066 aa22.42■■□□□ 1.18
CCDC88B-203ENST00000359902 UTP11Q9Y3A2 253 aaKnown RBP22.42■■□□□ 1.18
CCDC88B-203ENST00000359902 ARID2Q68CP9 1835 aa22.42■■□□□ 1.18
CCDC88B-203ENST00000359902 DOCK5Q9H7D0 1870 aa22.42■■□□□ 1.18
CCDC88B-203ENST00000359902 HNRNPDLO14979 420 aaKnown RBP22.42■■□□□ 1.18
CCDC88B-203ENST00000359902 GARTP22102 1010 aa22.42■■□□□ 1.18
CCDC88B-203ENST00000359902 FLT3P36888 993 aa22.42■■□□□ 1.18
CCDC88B-203ENST00000359902 UAP1Q16222 522 aaPredicted RBP22.42■■□□□ 1.18
CCDC88B-203ENST00000359902 APOBEC3FQ8IUX4 373 aaKnown RBP22.42■■□□□ 1.18
CCDC88B-203ENST00000359902 C1orf131Q8NDD1 294 aaKnown RBP22.42■■□□□ 1.18
CCDC88B-203ENST00000359902 TATDN2Q93075 761 aa22.42■■□□□ 1.18
CCDC88B-203ENST00000359902 ELMO3Q96BJ8 720 aa22.42■■□□□ 1.18
CCDC88B-203ENST00000359902 LRRC45Q96CN5 670 aa22.42■■□□□ 1.18
CCDC88B-203ENST00000359902 KLRG1Q96E93 195 aa22.42■■□□□ 1.18
CCDC88B-203ENST00000359902 ATP6V0A4Q9HBG4 840 aa22.42■■□□□ 1.18
CCDC88B-203ENST00000359902 ERVK-5Q9HDB9 667 aa22.42■■□□□ 1.18
CCDC88B-203ENST00000359902 ARHGAP28Q9P2N2 729 aa22.42■■□□□ 1.18
CCDC88B-203ENST00000359902 TMEM110-MUSTN1A8MSY1 372 aa22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 STAM2O75886 525 aa22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 DLATP10515 647 aaKnown RBP22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 CDR2Q01850 454 aa22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 CLUL1Q15846 466 aa22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 PPP2R5EQ16537 467 aa22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 DNAJC21Q5F1R6 531 aaKnown RBP22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 AADACL2Q6P093 401 aa22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 USP37Q86T82 979 aa22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 UBL4BQ8N7F7 174 aa22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 ATMINO43313 823 aaPredicted RBP22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 PPFIA4O75335 1185 aa22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 COMTP21964 271 aa22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 COPB2P35606 906 aa22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 MARCKSL1P49006 195 aa22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 SP2Q02086 613 aa22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 MESDQ14696 234 aa22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 LRIG3Q6UXM1 1119 aa22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 DDX1Q92499 740 aaKnown RBP22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 IFT74Q96LB3 600 aa22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 ZSWIM1Q9BR11 485 aa22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 FAM213AQ9BRX8 229 aa22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 POLR3FQ9H1D9 316 aaPredicted RBP22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 FAM114A2Q9NRY5 505 aa22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 ZNF541Q9H0D2 1346 aa22.41■■□□□ 1.18
CCDC88B-203ENST00000359902 H0YGN5 161 aa22.4■■□□□ 1.18
CCDC88B-203ENST00000359902 CYP1A2P05177 515 aa22.4■■□□□ 1.18
CCDC88B-203ENST00000359902 PEX5P50542 639 aa22.4■■□□□ 1.18
CCDC88B-203ENST00000359902 GNPTABQ3T906 1256 aa22.4■■□□□ 1.18
CCDC88B-203ENST00000359902 MIS18BP1Q6P0N0 1132 aa22.4■■□□□ 1.18
CCDC88B-203ENST00000359902 DHX38Q92620 1227 aaKnown RBP22.4■■□□□ 1.18
CCDC88B-203ENST00000359902 TRIM51Q9BSJ1 452 aa22.4■■□□□ 1.18
CCDC88B-203ENST00000359902 HOXC10Q9NYD6 342 aa22.4■■□□□ 1.18
CCDC88B-203ENST00000359902 NFS1Q9Y697 457 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms