RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 CALCAP01258 141 aa20.86■□□□□ 0.93
COL9A3-201ENST00000343916 PRKG1Q13976 671 aa20.86■□□□□ 0.93
COL9A3-201ENST00000343916 SLC17A8Q8NDX2 589 aa20.86■□□□□ 0.93
COL9A3-201ENST00000343916 HELQQ8TDG4 1101 aa20.86■□□□□ 0.93
COL9A3-201ENST00000343916 KIFAP3Q92845 792 aa20.86■□□□□ 0.93
COL9A3-201ENST00000343916 ATP6V0A1Q93050 837 aa20.86■□□□□ 0.93
COL9A3-201ENST00000343916 PI4K2AQ9BTU6 479 aa20.86■□□□□ 0.93
COL9A3-201ENST00000343916 CARD9Q9H257 536 aa20.86■□□□□ 0.93
COL9A3-201ENST00000343916 CYP39A1Q9NYL5 469 aa20.86■□□□□ 0.93
COL9A3-201ENST00000343916 PNMA2Q9UL42 364 aa20.86■□□□□ 0.93
COL9A3-201ENST00000343916 PLAAQ9Y263 795 aa20.86■□□□□ 0.93
COL9A3-201ENST00000343916 PEX10O60683 326 aa20.86■□□□□ 0.93
COL9A3-201ENST00000343916 SHOX2O60902 331 aaPredicted RBP20.86■□□□□ 0.93
COL9A3-201ENST00000343916 HSPA9P38646 679 aaKnown RBP20.86■□□□□ 0.93
COL9A3-201ENST00000343916 GPC5P78333 572 aa20.86■□□□□ 0.93
COL9A3-201ENST00000343916 PRKCEQ02156 737 aa20.86■□□□□ 0.93
COL9A3-201ENST00000343916 MAATS1Q7Z4T9 603 aa20.86■□□□□ 0.93
COL9A3-201ENST00000343916 CPNE8Q86YQ8 564 aa20.86■□□□□ 0.93
COL9A3-201ENST00000343916 RDM1Q8NG50 284 aa20.86■□□□□ 0.93
COL9A3-201ENST00000343916 SHC3Q92529 594 aa20.86■□□□□ 0.93
COL9A3-201ENST00000343916 BTBD6Q96KE9 485 aa20.86■□□□□ 0.93
COL9A3-201ENST00000343916 SENP7Q9BQF6 1050 aa20.86■□□□□ 0.93
COL9A3-201ENST00000343916 NTPCRQ9BSD7 190 aaKnown RBP20.86■□□□□ 0.93
COL9A3-201ENST00000343916 CAPS2Q9BXY5 557 aa20.86■□□□□ 0.93
COL9A3-201ENST00000343916 SLITRK6Q9H5Y7 841 aa20.86■□□□□ 0.93
COL9A3-201ENST00000343916 TMEM8AQ9HCN3 771 aa20.86■□□□□ 0.93
COL9A3-201ENST00000343916 ZNF112Q9UJU3 913 aa20.86■□□□□ 0.93
COL9A3-201ENST00000343916 TTC7AQ9ULT0 858 aaPredicted RBP20.86■□□□□ 0.93
COL9A3-201ENST00000343916 BHMG1C9JSJ3 638 aaPredicted RBP20.85■□□□□ 0.93
COL9A3-201ENST00000343916 RTN2O75298 545 aa20.85■□□□□ 0.93
COL9A3-201ENST00000343916 ATP1A2P50993 1020 aa20.85■□□□□ 0.93
COL9A3-201ENST00000343916 IRAK1P51617 712 aa20.85■□□□□ 0.93
COL9A3-201ENST00000343916 MFAP3P55082 362 aa20.85■□□□□ 0.93
COL9A3-201ENST00000343916 FMO1Q01740 532 aa20.85■□□□□ 0.93
COL9A3-201ENST00000343916 POU5F1Q01860 360 aaKnown RBP20.85■□□□□ 0.93
COL9A3-201ENST00000343916 MESDQ14696 234 aa20.85■□□□□ 0.93
COL9A3-201ENST00000343916 XRRA1Q6P2D8 792 aa20.85■□□□□ 0.93
COL9A3-201ENST00000343916 OR2W6PQ8NHA6 318 aa20.85■□□□□ 0.93
COL9A3-201ENST00000343916 CCDC26Q8TAB7 109 aa20.85■□□□□ 0.93
COL9A3-201ENST00000343916 TATDN2Q93075 761 aa20.85■□□□□ 0.93
COL9A3-201ENST00000343916 SLC9A2Q9UBY0 812 aa20.85■□□□□ 0.93
COL9A3-201ENST00000343916 HSD17B3P37058 310 aa20.85■□□□□ 0.93
COL9A3-201ENST00000343916 ACTR2P61160 394 aa20.85■□□□□ 0.93
COL9A3-201ENST00000343916 UAP1Q16222 522 aaPredicted RBP20.85■□□□□ 0.93
COL9A3-201ENST00000343916 SV2AQ7L0J3 742 aa20.85■□□□□ 0.93
COL9A3-201ENST00000343916 TAS1R3Q7RTX0 852 aa20.85■□□□□ 0.93
COL9A3-201ENST00000343916 FBXL13Q8NEE6 735 aa20.85■□□□□ 0.93
COL9A3-201ENST00000343916 BICD1Q96G01 975 aa20.85■□□□□ 0.93
COL9A3-201ENST00000343916 RAB20Q9NX57 234 aa20.85■□□□□ 0.93
COL9A3-201ENST00000343916 ADAMTS5Q9UNA0 930 aa20.85■□□□□ 0.93
COL9A3-201ENST00000343916 PHIPQ8WWQ0 1821 aa20.85■□□□□ 0.93
COL9A3-201ENST00000343916 ZNF541Q9H0D2 1346 aa20.84■□□□□ 0.93
COL9A3-201ENST00000343916 PMM2O15305 246 aa20.84■□□□□ 0.93
COL9A3-201ENST00000343916 MAFGO15525 162 aa20.84■□□□□ 0.93
COL9A3-201ENST00000343916 PSAPP07602 524 aa20.84■□□□□ 0.93
COL9A3-201ENST00000343916 CYP11B1P15538 503 aa20.84■□□□□ 0.93
COL9A3-201ENST00000343916 SP2Q02086 613 aa20.84■□□□□ 0.93
COL9A3-201ENST00000343916 CYP24A1Q07973 514 aa20.84■□□□□ 0.93
COL9A3-201ENST00000343916 MTERF2Q49AM1 385 aa20.84■□□□□ 0.93
COL9A3-201ENST00000343916 LMBRD2Q68DH5 695 aaPredicted RBP20.84■□□□□ 0.93
COL9A3-201ENST00000343916 TRPM4Q8TD43 1214 aa20.84■□□□□ 0.93
COL9A3-201ENST00000343916 ZNF526Q8TF50 670 aaPredicted RBP20.84■□□□□ 0.93
COL9A3-201ENST00000343916 SPIRE2Q8WWL2 714 aa20.84■□□□□ 0.93
COL9A3-201ENST00000343916 FAM213AQ9BRX8 229 aa20.84■□□□□ 0.93
COL9A3-201ENST00000343916 CYP26B1Q9NR63 512 aa20.84■□□□□ 0.93
COL9A3-201ENST00000343916 COMTP21964 271 aa20.84■□□□□ 0.93
COL9A3-201ENST00000343916 GPC3P51654 580 aa20.84■□□□□ 0.93
COL9A3-201ENST00000343916 FSTL1Q12841 308 aa20.84■□□□□ 0.93
COL9A3-201ENST00000343916 CEP85LQ5SZL2 805 aa20.84■□□□□ 0.93
COL9A3-201ENST00000343916 CYFIP1Q7L576 1253 aa20.84■□□□□ 0.93
COL9A3-201ENST00000343916 GLG1Q92896 1179 aa20.84■□□□□ 0.93
COL9A3-201ENST00000343916 VTI1AQ96AJ9 217 aa20.84■□□□□ 0.93
COL9A3-201ENST00000343916 FBXL18Q96ME1 805 aa20.84■□□□□ 0.93
COL9A3-201ENST00000343916 TEX13BQ9BXU2 312 aa20.84■□□□□ 0.93
COL9A3-201ENST00000343916 COQ4Q9Y3A0 265 aa20.84■□□□□ 0.93
COL9A3-201ENST00000343916 FZD9O00144 591 aa20.83■□□□□ 0.93
COL9A3-201ENST00000343916 DGAT1O75907 488 aa20.83■□□□□ 0.93
COL9A3-201ENST00000343916 GNGT1P63211 74 aa20.83■□□□□ 0.93
COL9A3-201ENST00000343916 HVCN1Q96D96 273 aa20.83■□□□□ 0.93
COL9A3-201ENST00000343916 MFSD14AQ96MC6 490 aa20.83■□□□□ 0.93
COL9A3-201ENST00000343916 NT5C1BQ96P26 610 aa20.83■□□□□ 0.93
COL9A3-201ENST00000343916 PDLIM7Q9NR12 457 aa20.83■□□□□ 0.93
COL9A3-201ENST00000343916 UTP11Q9Y3A2 253 aaKnown RBP20.83■□□□□ 0.93
COL9A3-201ENST00000343916 GRIN2DO15399 1336 aa20.83■□□□□ 0.93
COL9A3-201ENST00000343916 HADHBP55084 474 aaKnown RBP20.83■□□□□ 0.92
COL9A3-201ENST00000343916 PTENP60484 403 aa20.83■□□□□ 0.92
COL9A3-201ENST00000343916 GPD1LQ8N335 351 aa20.83■□□□□ 0.92
COL9A3-201ENST00000343916 EIF1ADQ8N9N8 165 aaKnown RBP20.83■□□□□ 0.92
COL9A3-201ENST00000343916 POLR3FQ9H1D9 316 aaPredicted RBP20.83■□□□□ 0.92
COL9A3-201ENST00000343916 ACAD9Q9H845 621 aa20.83■□□□□ 0.92
COL9A3-201ENST00000343916 DIS3Q9Y2L1 958 aaKnown RBP20.83■□□□□ 0.92
COL9A3-201ENST00000343916 BRCA1P38398 1863 aaKnown RBP20.83■□□□□ 0.92
COL9A3-201ENST00000343916 OAZ1P54368 228 aa20.82■□□□□ 0.92
COL9A3-201ENST00000343916 C11orf63Q6NUN7 778 aa20.82■□□□□ 0.92
COL9A3-201ENST00000343916 ABHD15Q6UXT9 468 aa20.82■□□□□ 0.92
COL9A3-201ENST00000343916 CATSPERGQ6ZRH7 1159 aa20.82■□□□□ 0.92
COL9A3-201ENST00000343916 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP20.82■□□□□ 0.92
COL9A3-201ENST00000343916 UPF1Q92900 1129 aaKnown RBP eCLIP20.82■□□□□ 0.927e-13■□□□□ 10.1
COL9A3-201ENST00000343916 CENPHQ9H3R5 247 aa20.82■□□□□ 0.92
COL9A3-201ENST00000343916 C17orf75Q9HAS0 396 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms