RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 C16orf87Q6PH81 154 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 SLC30A9Q6PML9 568 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 PIGBQ92521 554 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 CFAP36Q96G28 342 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 RANBP17Q9H2T7 1088 aaKnown RBP10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 HMGB3O15347 200 aaKnown RBP10.9□□□□□ -0.67
CCDC88A-202ENST00000336838 MTSS1O43312 755 aa10.9□□□□□ -0.67
CCDC88A-202ENST00000336838 SRGAP2CP0DJJ0 459 aa10.9□□□□□ -0.67
CCDC88A-202ENST00000336838 FMO5P49326 533 aa10.9□□□□□ -0.67
CCDC88A-202ENST00000336838 DCCP43146 1447 aa10.9□□□□□ -0.67
CCDC88A-202ENST00000336838 RGL2O15211 777 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 ESRRBO95718 433 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 ELF1P32519 619 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 NUDCD3Q8IVD9 361 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 NDUFAF2Q8N183 169 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 PROCA1Q8NCQ7 364 aaPredicted RBP10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 ANKS1AQ92625 1134 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 CNPY3Q9BT09 278 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 XAB2Q9HCS7 855 aaKnown RBP10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 TCP11X1B4DZS4 312 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 GNA15P30679 374 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 STAT3P40763 770 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 ABCE1P61221 599 aaKnown RBP10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 FAM196AQ6ZSG2 479 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 CAPN12Q6ZSI9 719 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 GPD1LQ8N335 351 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 PBXIP1Q96AQ6 731 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 TRABDQ9H4I3 376 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 HPSEQ9Y251 543 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 MAFGO15525 162 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 KRT14P02533 472 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 AASDHQ4L235 1098 aaPredicted RBP10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 RSRC2Q7L4I2 434 aaKnown RBP10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 RDM1Q8NG50 284 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 BTBD6Q96KE9 485 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 XPO6Q96QU8 1125 aaKnown RBP10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 OSBPL1AQ9BXW6 950 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 UCHL3P15374 230 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 EEF1B2P24534 225 aaKnown RBP10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 OCRLQ01968 901 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 ANKRD40Q6AI12 368 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 LRRC1Q9BTT6 524 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 ZNF212Q9UDV6 495 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 KRT17Q04695 432 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 STOX1Q6ZVD7 989 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 FUCA2Q9BTY2 467 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 FUT8Q9BYC5 575 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 AGXT2Q9BYV1 514 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 DDX47Q9H0S4 455 aaKnown RBP10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 GINM1Q9NU53 330 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 SEPT3Q9UH03 358 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 RAB21Q9UL25 225 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 MINPP1Q9UNW1 487 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 L3MBTL1Q9Y468 752 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 GOLGA4Q13439 2230 aaKnown RBP10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 A0A087WWV3 80 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 MAPK6Q16659 721 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 HEATR6Q6AI08 1181 aaKnown RBP10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 LZICQ8WZA0 190 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 MRPL4Q9BYD3 311 aaKnown RBP10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 INO80B-WBP1J3KQ70 363 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 TNPO2O14787 897 aaKnown RBP10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 NVLO15381 856 aaKnown RBP10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 SDC4P31431 198 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 RAD23BP54727 409 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 PDXDC2PQ6P474 469 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 YTHDF3Q7Z739 585 aaKnown RBP10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 COA7Q96BR5 231 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 CEP95Q96GE4 821 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 ING2Q9H160 280 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 PABPC3Q9H361 631 aaKnown RBP10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 TMCC1O94876 653 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 HSPA1AP0DMV8 641 aaKnown RBP10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 HSPA1BP0DMV9 641 aaKnown RBP10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 MMP14P50281 582 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 PTGISQ16647 500 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 ZNF662Q6ZS27 426 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 CCNYQ8ND76 341 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 VPS33BQ9H267 617 aa10.89□□□□□ -0.67
CCDC88A-202ENST00000336838 LRRIQ3A6PVS8 624 aaPredicted RBP10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 USP17L5A8MUK1 530 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 PPM1FP49593 454 aaPredicted RBP10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 KCNQ4P56696 695 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 INPP5AQ14642 412 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 IZUMO3Q5VZ72 239 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 KIAA0825Q8IV33 1275 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 TSPAN17Q96FV3 270 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 BFARQ9NZS9 450 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 ZC3H11AO75152 810 aaKnown RBP eCLIP10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 UHMK1Q8TAS1 419 aaKnown RBP10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 ZBTB9Q96C00 473 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 POLR3CQ9BUI4 534 aaPredicted RBP10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 AIPL1Q9NZN9 384 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 CPSF3Q9UKF6 684 aaKnown RBP10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 FHOD1Q9Y613 1164 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 OSBPP22059 807 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 IL10P22301 178 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 AARSP49588 968 aaKnown RBP eCLIP10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 LXNQ9BS40 222 aa10.88□□□□□ -0.67
CCDC88A-202ENST00000336838 TMEM247A6NEH6 219 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms