RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 GRAPQ13588 217 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 CC2D2BQ6DHV5 1058 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 POTEGQ6S5H5 508 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 POTEEQ6S8J3 1075 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 CDKL3Q8IVW4 592 aaPredicted RBP18.36■□□□□ 0.53
SYNPO-201ENST00000307662 C3orf20Q8ND61 904 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 SLC35G2Q8TBE7 412 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 GRAPLQ8TC17 118 aaPredicted RBP18.36■□□□□ 0.53
SYNPO-201ENST00000307662 ZNF229Q9UJW7 825 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 SPATA31A3Q5VYP0 1347 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 SUPT3HO75486 399 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 GYPCP04921 128 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 MDH1BQ5I0G3 518 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 HEATR6Q6AI08 1181 aaKnown RBP18.36■□□□□ 0.53
SYNPO-201ENST00000307662 KIAA2013Q8IYS2 634 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 ALKBH8Q96BT7 664 aaKnown RBP18.36■□□□□ 0.53
SYNPO-201ENST00000307662 TBC1D23Q9NUY8 699 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 SMARCAL1Q9NZC9 954 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 KRT27Q7Z3Y8 459 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 ANKMY2Q8IV38 441 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 MCPH1Q8NEM0 835 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 PBXIP1Q96AQ6 731 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 FAM213AQ9BRX8 229 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 ATP6V0A4Q9HBG4 840 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 CDHR2Q9BYE9 1310 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 SNX2O60749 519 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 ZNF699Q32M78 642 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 SH3RF3Q8TEJ3 882 aaPredicted RBP18.36■□□□□ 0.53
SYNPO-201ENST00000307662 TRIM9Q9C026 710 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 LZTS1Q9Y250 596 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 CLRN2A0PK11 232 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 SRGAP2CP0DJJ0 459 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 EIF2AK2P19525 551 aaKnown RBP18.36■□□□□ 0.53
SYNPO-201ENST00000307662 ERFP50548 548 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 CYLC2Q14093 348 aaPredicted RBP18.36■□□□□ 0.53
SYNPO-201ENST00000307662 LRRC36Q1X8D7 754 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 APLFQ8IW19 511 aaPredicted RBP18.36■□□□□ 0.53
SYNPO-201ENST00000307662 REXO1L1PQ8IX06 675 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 PPCSQ9HAB8 311 aa18.36■□□□□ 0.53
SYNPO-201ENST00000307662 LRRC7Q96NW7 1537 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 CDC42BPBQ9Y5S2 1711 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 SLC16A4O15374 487 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 DEAF1O75398 565 aaPredicted RBP18.35■□□□□ 0.53
SYNPO-201ENST00000307662 GUCY1A2P33402 732 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 PPARGP37231 505 aaPredicted RBP18.35■□□□□ 0.53
SYNPO-201ENST00000307662 TRPC1P48995 793 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 CAPRIN1Q14444 709 aaKnown RBP18.35■□□□□ 0.53
SYNPO-201ENST00000307662 CRYMQ14894 314 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 CPVLQ9H3G5 476 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 DDX28Q9NUL7 540 aaKnown RBP18.35■□□□□ 0.53
SYNPO-201ENST00000307662 A0A1W2PQJ5 194 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 TMEM120BA0PK00 339 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 GOLGA8RI6L899 631 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 DAB1O75553 588 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 TRIM49P0CI25 452 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 TRIM49CP0CI26 452 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 CEP55Q53EZ4 464 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 ANGPTL8Q6UXH0 198 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 RBM15Q96T37 977 aaKnown RBP eCLIP18.35■□□□□ 0.53
SYNPO-201ENST00000307662 PKD2L2Q9NZM6 624 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 DLGAP2Q9P1A6 1054 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 PSMC3IPQ9P2W1 217 aaPredicted RBP18.35■□□□□ 0.53
SYNPO-201ENST00000307662 BAG6P46379 1132 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 POU5F1BQ06416 359 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 RWDD4Q6NW29 188 aaKnown RBP18.35■□□□□ 0.53
SYNPO-201ENST00000307662 OR6B3Q8NGW1 331 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 PNKPQ96T60 521 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 CCSER1Q9C0I3 900 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 PARVAQ9NVD7 372 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 KIF17Q9P2E2 1029 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 USP17L15C9J2P7 530 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 USP17L13C9JLJ4 530 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 USP17L11C9JVI0 530 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 USP17L18D6R9N7 530 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 USP17L22D6RA61 530 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 USP17L17D6RBQ6 530 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 USP17L19D6RCP7 530 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 USP17L20D6RJB6 530 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 PDXKO00764 312 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 SLC16A3O15427 465 aaKnown RBP18.35■□□□□ 0.53
SYNPO-201ENST00000307662 MAP4P27816 1152 aaKnown RBP18.35■□□□□ 0.53
SYNPO-201ENST00000307662 BCAR1P56945 870 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 USP17L24Q0WX57 530 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 USP17L6PQ6QN14 398 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 FRA10AC1Q70Z53 315 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 FSD1LQ9BXM9 530 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 TEKT2Q9UIF3 430 aa18.35■□□□□ 0.53
SYNPO-201ENST00000307662 USP42Q9H9J4 1324 aaKnown RBP18.35■□□□□ 0.53
SYNPO-201ENST00000307662 XPAP23025 273 aaPredicted RBP18.34■□□□□ 0.53
SYNPO-201ENST00000307662 SERPINB3P29508 390 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 SDC4P31431 198 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 NSUN2Q08J23 767 aaKnown RBP eCLIP18.34■□□□□ 0.53
SYNPO-201ENST00000307662 OLFML2BQ68BL8 750 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 USP38Q8NB14 1042 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 NAF1Q96HR8 494 aaKnown RBP18.34■□□□□ 0.53
SYNPO-201ENST00000307662 KCNK16Q96T55 309 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 AXIN2Q9Y2T1 843 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 EMSYQ7Z589 1322 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 USP31Q70CQ4 1352 aa18.34■□□□□ 0.53
SYNPO-201ENST00000307662 SEC24DO94855 1032 aaPredicted RBP18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms