RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 SNRPFP62306 86 aaKnown RBP19.77■□□□□ 0.76
SHKBP1-201ENST00000291842 PDCLQ13371 301 aa19.77■□□□□ 0.76
SHKBP1-201ENST00000291842 DCAF15Q66K64 600 aa19.77■□□□□ 0.76
SHKBP1-201ENST00000291842 LMBRD2Q68DH5 695 aaPredicted RBP19.77■□□□□ 0.76
SHKBP1-201ENST00000291842 HELQQ8TDG4 1101 aa19.77■□□□□ 0.76
SHKBP1-201ENST00000291842 FAM213AQ9BRX8 229 aa19.77■□□□□ 0.76
SHKBP1-201ENST00000291842 JPH1Q9HDC5 661 aaPredicted RBP19.77■□□□□ 0.76
SHKBP1-201ENST00000291842 XPNPEP1Q9NQW7 623 aa19.77■□□□□ 0.76
SHKBP1-201ENST00000291842 TTC7AQ9ULT0 858 aaPredicted RBP19.77■□□□□ 0.76
SHKBP1-201ENST00000291842 UTP11Q9Y3A2 253 aaKnown RBP19.77■□□□□ 0.76
SHKBP1-201ENST00000291842 BHMG1C9JSJ3 638 aaPredicted RBP19.77■□□□□ 0.75
SHKBP1-201ENST00000291842 COMTP21964 271 aa19.77■□□□□ 0.75
SHKBP1-201ENST00000291842 FMO1Q01740 532 aa19.77■□□□□ 0.75
SHKBP1-201ENST00000291842 POU5F1Q01860 360 aaKnown RBP19.77■□□□□ 0.75
SHKBP1-201ENST00000291842 PRKCEQ02156 737 aa19.77■□□□□ 0.75
SHKBP1-201ENST00000291842 CYFIP1Q7L576 1253 aa19.77■□□□□ 0.75
SHKBP1-201ENST00000291842 UBLCP1Q8WVY7 318 aaPredicted RBP19.77■□□□□ 0.75
SHKBP1-201ENST00000291842 SHC3Q92529 594 aa19.77■□□□□ 0.75
SHKBP1-201ENST00000291842 KIFAP3Q92845 792 aa19.77■□□□□ 0.75
SHKBP1-201ENST00000291842 ATP6V0A1Q93050 837 aa19.77■□□□□ 0.75
SHKBP1-201ENST00000291842 AS3MTQ9HBK9 375 aa19.77■□□□□ 0.75
SHKBP1-201ENST00000291842 TMEM8AQ9HCN3 771 aa19.77■□□□□ 0.75
SHKBP1-201ENST00000291842 MTERF2Q49AM1 385 aa19.76■□□□□ 0.75
SHKBP1-201ENST00000291842 SV2AQ7L0J3 742 aa19.76■□□□□ 0.75
SHKBP1-201ENST00000291842 FBXL13Q8NEE6 735 aa19.76■□□□□ 0.75
SHKBP1-201ENST00000291842 A1CFQ9NQ94 594 aaKnown RBP19.76■□□□□ 0.75
SHKBP1-201ENST00000291842 RAB20Q9NX57 234 aa19.76■□□□□ 0.75
SHKBP1-201ENST00000291842 CYP39A1Q9NYL5 469 aa19.76■□□□□ 0.75
SHKBP1-201ENST00000291842 GRIN2DO15399 1336 aa19.76■□□□□ 0.75
SHKBP1-201ENST00000291842 PPFIA4O75335 1185 aa19.76■□□□□ 0.75
SHKBP1-201ENST00000291842 PSAPP07602 524 aa19.76■□□□□ 0.75
SHKBP1-201ENST00000291842 CYP11B1P15538 503 aa19.76■□□□□ 0.75
SHKBP1-201ENST00000291842 ACTR2P61160 394 aa19.76■□□□□ 0.75
SHKBP1-201ENST00000291842 CYP24A1Q07973 514 aa19.76■□□□□ 0.75
SHKBP1-201ENST00000291842 LLGL1Q15334 1064 aa19.76■□□□□ 0.75
SHKBP1-201ENST00000291842 SLC17A8Q8NDX2 589 aa19.76■□□□□ 0.75
SHKBP1-201ENST00000291842 NTPCRQ9BSD7 190 aaKnown RBP19.76■□□□□ 0.75
SHKBP1-201ENST00000291842 SLC9A2Q9UBY0 812 aa19.76■□□□□ 0.75
SHKBP1-201ENST00000291842 PARP14Q460N5 1801 aa19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 WDR81Q562E7 1941 aa19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 FDX1P10109 184 aa19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 CTNNA1P35221 906 aaKnown RBP19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 PTENP60484 403 aa19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 DR1Q01658 176 aa19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 SP2Q02086 613 aa19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 FSTL1Q12841 308 aa19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 TAS1R3Q7RTX0 852 aa19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 RDM1Q8NG50 284 aa19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 VTI1AQ96AJ9 217 aa19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 NT5C1BQ96P26 610 aa19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 SENP7Q9BQF6 1050 aa19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 NUP85Q9BW27 656 aa19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 CYP26B1Q9NR63 512 aa19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 RRP15Q9Y3B9 282 aaKnown RBP19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 KRT5P13647 590 aa19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 XRRA1Q6P2D8 792 aa19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 SRLQ86TD4 932 aa19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 CD302Q8IX05 232 aa19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 ZNF526Q8TF50 670 aaPredicted RBP19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 SPIRE2Q8WWL2 714 aa19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 ZNF653Q96CK0 615 aa19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 C18orf8Q96DM3 657 aa19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 MFSD14AQ96MC6 490 aa19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 POLR3FQ9H1D9 316 aaPredicted RBP19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 PNMA2Q9UL42 364 aa19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 DIS3Q9Y2L1 958 aaKnown RBP19.75■□□□□ 0.75
SHKBP1-201ENST00000291842 PMM2O15305 246 aa19.74■□□□□ 0.75
SHKBP1-201ENST00000291842 ZEB2O60315 1214 aa19.74■□□□□ 0.75
SHKBP1-201ENST00000291842 GPC3P51654 580 aa19.74■□□□□ 0.75
SHKBP1-201ENST00000291842 C11orf63Q6NUN7 778 aa19.74■□□□□ 0.75
SHKBP1-201ENST00000291842 UBL4BQ8N7F7 174 aa19.74■□□□□ 0.75
SHKBP1-201ENST00000291842 EIF1ADQ8N9N8 165 aaKnown RBP19.74■□□□□ 0.75
SHKBP1-201ENST00000291842 BCAS4Q8TDM0 211 aa19.74■□□□□ 0.75
SHKBP1-201ENST00000291842 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.74■□□□□ 0.75
SHKBP1-201ENST00000291842 LRRC45Q96CN5 670 aa19.74■□□□□ 0.75
SHKBP1-201ENST00000291842 ATP6V1G3Q96LB4 118 aa19.74■□□□□ 0.75
SHKBP1-201ENST00000291842 ZSWIM1Q9BR11 485 aa19.74■□□□□ 0.75
SHKBP1-201ENST00000291842 ZNF112Q9UJU3 913 aa19.74■□□□□ 0.75
SHKBP1-201ENST00000291842 TRPC6Q9Y210 931 aa19.74■□□□□ 0.75
SHKBP1-201ENST00000291842 COQ4Q9Y3A0 265 aa19.74■□□□□ 0.75
SHKBP1-201ENST00000291842 DOCK1Q14185 1865 aa19.74■□□□□ 0.75
SHKBP1-201ENST00000291842 RLFQ13129 1914 aa19.74■□□□□ 0.75
SHKBP1-201ENST00000291842 GOLGA6L10A0A0M3HER8 536 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 H0YGN5 161 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 TRIM66O15016 1216 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 EIF3HO15372 352 aaKnown RBP eCLIP19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 MAFGO15525 162 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 DGAT1O75907 488 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 HPDP32754 393 aaPredicted RBP19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 PDE6CP51160 858 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 HADHBP55084 474 aaKnown RBP19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 GUCY1A3Q02108 690 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 PHLDB2Q86SQ0 1253 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 ZDHHC14Q8IZN3 488 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 GPD1LQ8N335 351 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 ZNF564Q8TBZ8 553 aaPredicted RBP19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 TRPM4Q8TD43 1214 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 ATP8B4Q8TF62 1192 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 TMEM143Q96AN5 459 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 HVCN1Q96D96 273 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms