RNA–Protein interactions for RNA: ENST00000285116.7

SKA1-201, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SKA1, Length 2,905 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-201ENST00000285116 DPH5Q9H2P9 285 aa11.15□□□□□ -0.63
SKA1-201ENST00000285116 ADAM7Q9H2U9 754 aa11.15□□□□□ -0.63
SKA1-201ENST00000285116 ROPN1Q9HAT0 212 aaPredicted RBP11.15□□□□□ -0.63
SKA1-201ENST00000285116 COG5Q9UP83 839 aa11.15□□□□□ -0.63
SKA1-201ENST00000285116 NR2E1Q9Y466 385 aa11.15□□□□□ -0.63
SKA1-201ENST00000285116 ZNFX1Q9P2E3 1918 aaKnown RBP11.14□□□□□ -0.63
SKA1-201ENST00000285116 CLIC2O15247 247 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 CRKP46108 304 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 PEX5P50542 639 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 NCALDP61601 193 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 CBWD6Q4V339 395 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 CBWD3Q5JTY5 395 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 CBWD5Q5RIA9 395 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 DENND2CQ68D51 928 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 ANKRD27Q96NW4 1050 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 TRIM51Q9BSJ1 452 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 LRRC4CQ9HCJ2 640 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 AGAP1Q9UPQ3 857 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 RPTORQ8N122 1335 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 ANKRD33BA6NCL7 494 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 G3V3G9 751 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 NDUFB10O96000 172 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 VIMP08670 466 aaKnown RBP11.14□□□□□ -0.63
SKA1-201ENST00000285116 RARAP10276 462 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 HMGB2P26583 209 aaKnown RBP11.14□□□□□ -0.63
SKA1-201ENST00000285116 ALDH5A1P51649 535 aaPredicted RBP11.14□□□□□ -0.63
SKA1-201ENST00000285116 INHBEP58166 350 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 NFIAQ12857 509 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 BLMHQ13867 455 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 EPC2Q52LR7 807 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 DCAF8Q5TAQ9 597 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 MYCT1Q8N699 235 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 NLGN2Q8NFZ4 835 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 ALG3Q92685 438 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 THAP2Q9H0W7 228 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 ST6GALNAC4Q9H4F1 302 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 ERVK-5Q9HDB9 667 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 FAM198AQ9UFP1 575 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 BCS1LQ9Y276 419 aa11.14□□□□□ -0.63
SKA1-201ENST00000285116 RGS16O15492 202 aaPredicted RBP11.13□□□□□ -0.63
SKA1-201ENST00000285116 PLA2G6O60733 806 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 BMP3P12645 472 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 NMT1P30419 496 aaKnown RBP11.13□□□□□ -0.63
SKA1-201ENST00000285116 PEX19P40855 299 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 PDE6CP51160 858 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 KCNJ2P63252 427 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 ENPEPQ07075 957 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 MKRN4PQ13434 485 aaPredicted RBP11.13□□□□□ -0.63
SKA1-201ENST00000285116 NBPF20Q3BBV1 942 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 INTS8Q75QN2 995 aaKnown RBP11.13□□□□□ -0.63
SKA1-201ENST00000285116 PRELID2Q8N945 189 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 RNF217Q8TC41 542 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 ART4Q93070 314 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 RNF25Q96BH1 459 aaPredicted RBP11.13□□□□□ -0.63
SKA1-201ENST00000285116 WDR18Q9BV38 432 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 ZC3H12CQ9C0D7 883 aaKnown RBP11.13□□□□□ -0.63
SKA1-201ENST00000285116 ECT2Q9H8V3 914 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 EHMT1Q9H9B1 1298 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 ABCF3Q9NUQ8 709 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 MTRF1LQ9UGC7 380 aaKnown RBP11.13□□□□□ -0.63
SKA1-201ENST00000285116 ZBTB12Q9Y330 459 aaPredicted RBP11.13□□□□□ -0.63
SKA1-201ENST00000285116 ALG6Q9Y672 507 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 SNX3O60493 162 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 UBOX5O94941 541 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 RARGP13631 454 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 POLD1P28340 1107 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 CCNG1P51959 295 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 GPC5P78333 572 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 GALNTL6Q49A17 601 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 SLC27A3Q5K4L6 730 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 PHLDB3Q6NSJ2 640 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 PODNQ7Z5L7 613 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 FAM178BQ8IXR5 827 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 IFT74Q96LB3 600 aa11.13□□□□□ -0.63
SKA1-201ENST00000285116 PRMT1Q99873 361 aaKnown RBP11.13□□□□□ -0.63
SKA1-201ENST00000285116 ZNF277Q9NRM2 450 aaPredicted RBP11.13□□□□□ -0.63
SKA1-201ENST00000285116 EME2A4GXA9 379 aaPredicted RBP11.12□□□□□ -0.63
SKA1-201ENST00000285116 SHBGP04278 402 aa11.12□□□□□ -0.63
SKA1-201ENST00000285116 SAMD1Q6SPF0 538 aaPredicted RBP11.12□□□□□ -0.63
SKA1-201ENST00000285116 TRMT10CQ7L0Y3 403 aaKnown RBP11.12□□□□□ -0.63
SKA1-201ENST00000285116 SH3BP5LQ7L8J4 393 aa11.12□□□□□ -0.63
SKA1-201ENST00000285116 DNAAF5Q86Y56 855 aa11.12□□□□□ -0.63
SKA1-201ENST00000285116 ZFPM1Q8IX07 1006 aa11.12□□□□□ -0.63
SKA1-201ENST00000285116 DYDC2Q96IM9 177 aa11.12□□□□□ -0.63
SKA1-201ENST00000285116 TMEM206Q9H813 350 aa11.12□□□□□ -0.63
SKA1-201ENST00000285116 RGL1Q9NZL6 768 aa11.12□□□□□ -0.63
SKA1-201ENST00000285116 FAM196BA6NMK8 535 aa11.12□□□□□ -0.63
SKA1-201ENST00000285116 IGF2BP3O00425 579 aaKnown RBP eCLIP11.12□□□□□ -0.63
SKA1-201ENST00000285116 ENTPD3O75355 529 aa11.12□□□□□ -0.63
SKA1-201ENST00000285116 RAD17O75943 681 aa11.12□□□□□ -0.63
SKA1-201ENST00000285116 CYP1A2P05177 515 aa11.12□□□□□ -0.63
SKA1-201ENST00000285116 VIL1P09327 827 aaKnown RBP11.12□□□□□ -0.63
SKA1-201ENST00000285116 RWDD2BP57060 319 aa11.12□□□□□ -0.63
SKA1-201ENST00000285116 CYP4A11Q02928 519 aa11.12□□□□□ -0.63
SKA1-201ENST00000285116 RBBP5Q15291 538 aaKnown RBP11.12□□□□□ -0.63
SKA1-201ENST00000285116 KLHL29Q96CT2 875 aa11.12□□□□□ -0.63
SKA1-201ENST00000285116 RIT2Q99578 217 aa11.12□□□□□ -0.63
SKA1-201ENST00000285116 TIPINQ9BVW5 301 aa11.12□□□□□ -0.63
SKA1-201ENST00000285116 FZD1Q9UP38 647 aa11.12□□□□□ -0.63
SKA1-201ENST00000285116 USP15Q9Y4E8 981 aaPredicted RBP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms