RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 ARMCX4Q5H9R4 360 aa9.21□□□□□ -0.94
NIPBL-201ENST00000282516 EFL1Q7Z2Z2 1120 aaKnown RBP9.21□□□□□ -0.94
NIPBL-201ENST00000282516 RNF135Q8IUD6 432 aa9.21□□□□□ -0.94
NIPBL-201ENST00000282516 BEST2Q8NFU1 509 aa9.21□□□□□ -0.94
NIPBL-201ENST00000282516 CNKSR1Q969H4 720 aa9.21□□□□□ -0.94
NIPBL-201ENST00000282516 MORC2Q9Y6X9 1032 aaPredicted RBP9.21□□□□□ -0.94
NIPBL-201ENST00000282516 ANO9A1A5B4 782 aa9.21□□□□□ -0.94
NIPBL-201ENST00000282516 CYTH3O43739 400 aa9.21□□□□□ -0.94
NIPBL-201ENST00000282516 SERPINB3P29508 390 aa9.21□□□□□ -0.94
NIPBL-201ENST00000282516 ASZ1Q8WWH4 475 aa9.21□□□□□ -0.94
NIPBL-201ENST00000282516 CMTM5Q96DZ9 223 aa9.21□□□□□ -0.94
NIPBL-201ENST00000282516 KCNK16Q96T55 309 aa9.21□□□□□ -0.94
NIPBL-201ENST00000282516 EYA1Q99502 592 aa9.21□□□□□ -0.94
NIPBL-201ENST00000282516 DFFAO00273 331 aa9.21□□□□□ -0.94
NIPBL-201ENST00000282516 NCF4Q15080 339 aa9.21□□□□□ -0.94
NIPBL-201ENST00000282516 MCPH1Q8NEM0 835 aa9.21□□□□□ -0.94
NIPBL-201ENST00000282516 STON1Q9Y6Q2 735 aa9.21□□□□□ -0.94
NIPBL-201ENST00000282516 A2MP01023 1474 aa9.21□□□□□ -0.94
NIPBL-201ENST00000282516 MLH3Q9UHC1 1453 aa9.21□□□□□ -0.94
NIPBL-201ENST00000282516 GPR162Q16538 588 aa9.21□□□□□ -0.94
NIPBL-201ENST00000282516 ARL6IP4Q66PJ3 421 aaKnown RBP9.21□□□□□ -0.94
NIPBL-201ENST00000282516 ARL8AQ96BM9 186 aa9.21□□□□□ -0.94
NIPBL-201ENST00000282516 ZC3H7BQ9UGR2 993 aaKnown RBP9.21□□□□□ -0.94
NIPBL-201ENST00000282516 GRIN2AQ12879 1464 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 PDIA2Q13087 525 aaKnown RBP9.2□□□□□ -0.94
NIPBL-201ENST00000282516 TBC1D10BQ4KMP7 808 aaPredicted RBP9.2□□□□□ -0.94
NIPBL-201ENST00000282516 TBCKQ8TEA7 893 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 SMG5Q9UPR3 1016 aaKnown RBP9.2□□□□□ -0.94
NIPBL-201ENST00000282516 K7ERI5 159 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 NR3C1P04150 777 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.2□□□□□ -0.944e-9■□□□□ 9.6
NIPBL-201ENST00000282516 MTERF2Q49AM1 385 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 SYDE1Q6ZW31 735 aaPredicted RBP9.2□□□□□ -0.94
NIPBL-201ENST00000282516 RHPN2Q8IUC4 686 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 ZNF564Q8TBZ8 553 aaPredicted RBP9.2□□□□□ -0.94
NIPBL-201ENST00000282516 FHDC1Q9C0D6 1143 aaPredicted RBP9.2□□□□□ -0.94
NIPBL-201ENST00000282516 SRPRBQ9Y5M8 271 aaKnown RBP9.2□□□□□ -0.94
NIPBL-201ENST00000282516 M0QYV0 167 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 HSPA9P38646 679 aaKnown RBP9.2□□□□□ -0.94
NIPBL-201ENST00000282516 GPC5P78333 572 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 TMEM270Q6UE05 265 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 KIAA0825Q8IV33 1275 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 SNX31Q8N9S9 440 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 SLC9A2Q9UBY0 812 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 CNOT8Q9UFF9 292 aaKnown RBP9.2□□□□□ -0.94
NIPBL-201ENST00000282516 TEX28O15482 410 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 ADD1P35611 737 aaKnown RBP9.2□□□□□ -0.94
NIPBL-201ENST00000282516 CCDC149Q6ZUS6 474 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 C11orf57Q6ZUT1 292 aaPredicted RBP9.2□□□□□ -0.94
NIPBL-201ENST00000282516 SCN4BQ8IWT1 228 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 AHI1Q8N157 1196 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 PIK3R5Q8WYR1 880 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 DNAJC7Q99615 494 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 PFASO15067 1338 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 BCAR1P56945 870 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 LRRC41Q15345 812 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 PHKG1Q16816 387 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 KRT24Q2M2I5 525 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 POTEEQ6S8J3 1075 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 SH3BP5LQ7L8J4 393 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 FAM49AQ9H0Q0 323 aaPredicted RBP9.2□□□□□ -0.94
NIPBL-201ENST00000282516 TRABDQ9H4I3 376 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 VIPAS39Q9H9C1 493 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 PNMA6FA0A0J9YX94 578 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 STRNO43815 780 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 SYNCRIPO60506 623 aaKnown RBP9.2□□□□□ -0.94
NIPBL-201ENST00000282516 PDIA3P30101 505 aaKnown RBP9.2□□□□□ -0.94
NIPBL-201ENST00000282516 ACCSLQ4AC99 568 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 MICU2Q8IYU8 434 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 DHX36Q9H2U1 1008 aaKnown RBP9.2□□□□□ -0.94
NIPBL-201ENST00000282516 TUBGCP4Q9UGJ1 667 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 UBA6A0AVT1 1052 aaPredicted RBP9.2□□□□□ -0.94
NIPBL-201ENST00000282516 H7C0S8 307 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 TLR2O60603 784 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 MMP1P03956 469 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 KYAT1Q16773 422 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 DPP10Q8N608 796 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 HES6Q96HZ4 224 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 SLC13A1Q9BZW2 595 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 RPAP3Q9H6T3 665 aaPredicted RBP9.2□□□□□ -0.94
NIPBL-201ENST00000282516 HSPBP1Q9NZL4 362 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 LAMC3Q9Y6N6 1575 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 KRT17Q04695 432 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 MTHFD1LQ6UB35 978 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 SNX24Q9Y343 169 aa9.2□□□□□ -0.94
NIPBL-201ENST00000282516 LGALS16A8MUM7 142 aa9.19□□□□□ -0.94
NIPBL-201ENST00000282516 RHOBTB1O94844 696 aa9.19□□□□□ -0.94
NIPBL-201ENST00000282516 HIST1H2AGP0C0S8 130 aaPredicted RBP9.19□□□□□ -0.94
NIPBL-201ENST00000282516 MYL2P10916 166 aa9.19□□□□□ -0.94
NIPBL-201ENST00000282516 RALAP11233 206 aa9.19□□□□□ -0.94
NIPBL-201ENST00000282516 HIST1H2ADP20671 130 aa9.19□□□□□ -0.94
NIPBL-201ENST00000282516 COPB2P35606 906 aa9.19□□□□□ -0.94
NIPBL-201ENST00000282516 PPP3CCP48454 512 aa9.19□□□□□ -0.94
NIPBL-201ENST00000282516 ATXN3P54252 364 aaPredicted RBP9.19□□□□□ -0.94
NIPBL-201ENST00000282516 DHX34Q14147 1143 aaKnown RBP9.19□□□□□ -0.94
NIPBL-201ENST00000282516 IKBIPQ70UQ0 350 aa9.19□□□□□ -0.94
NIPBL-201ENST00000282516 VPS37AQ8NEZ2 397 aa9.19□□□□□ -0.94
NIPBL-201ENST00000282516 RFWD2Q8NHY2 731 aa9.19□□□□□ -0.94
NIPBL-201ENST00000282516 HIST1H2AHQ96KK5 128 aa9.19□□□□□ -0.94
NIPBL-201ENST00000282516 HIST1H2AJQ99878 128 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms