RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 RAET1EQ8TD07 263 aa15.33■□□□□ 0.05
SS18-201ENST00000269137 SYN2Q92777 582 aaPredicted RBP15.33■□□□□ 0.05
SS18-201ENST00000269137 PRIMPOLQ96LW4 560 aa15.33■□□□□ 0.05
SS18-201ENST00000269137 FDXACB1Q9BRP7 624 aaPredicted RBP15.33■□□□□ 0.05
SS18-201ENST00000269137 PTPRHQ9HD43 1115 aa15.33■□□□□ 0.05
SS18-201ENST00000269137 SIX2Q9NPC8 291 aa15.33■□□□□ 0.05
SS18-201ENST00000269137 PGK1P00558 417 aa15.33■□□□□ 0.04
SS18-201ENST00000269137 NLRP11P59045 1033 aaKnown RBP15.33■□□□□ 0.04
SS18-201ENST00000269137 POLR2FP61218 127 aaKnown RBP15.33■□□□□ 0.04
SS18-201ENST00000269137 CLDN10P78369 228 aa15.33■□□□□ 0.04
SS18-201ENST00000269137 MCL1Q07820 350 aa15.33■□□□□ 0.04
SS18-201ENST00000269137 PSMD6Q15008 389 aa15.33■□□□□ 0.04
SS18-201ENST00000269137 AMHR2Q16671 573 aa15.33■□□□□ 0.04
SS18-201ENST00000269137 PDXDC1Q6P996 788 aa15.33■□□□□ 0.04
SS18-201ENST00000269137 TRIM65Q6PJ69 517 aa15.33■□□□□ 0.04
SS18-201ENST00000269137 RRAGAQ7L523 313 aa15.33■□□□□ 0.04
SS18-201ENST00000269137 SRGAP1Q7Z6B7 1085 aa15.33■□□□□ 0.04
SS18-201ENST00000269137 ZNF710Q8N1W2 664 aa15.33■□□□□ 0.04
SS18-201ENST00000269137 KLHDC9Q8NEP7 349 aa15.33■□□□□ 0.04
SS18-201ENST00000269137 ZNF296Q8WUU4 475 aaPredicted RBP15.33■□□□□ 0.04
SS18-201ENST00000269137 ZNF668Q96K58 619 aaPredicted RBP15.33■□□□□ 0.04
SS18-201ENST00000269137 XPNPEP3Q9NQH7 507 aa15.33■□□□□ 0.04
SS18-201ENST00000269137 ANKFY1Q9P2R3 1169 aa15.33■□□□□ 0.04
SS18-201ENST00000269137 MYO6Q9UM54 1294 aa15.33■□□□□ 0.04
SS18-201ENST00000269137 TNFSF13BQ9Y275 285 aa15.33■□□□□ 0.04
SS18-201ENST00000269137 SOWAHDA6NJG2 315 aa15.32■□□□□ 0.04
SS18-201ENST00000269137 LRRIQ3A6PVS8 624 aaPredicted RBP15.32■□□□□ 0.04
SS18-201ENST00000269137 CCP110O43303 1012 aa15.32■□□□□ 0.04
SS18-201ENST00000269137 FAM189A1O60320 539 aa15.32■□□□□ 0.04
SS18-201ENST00000269137 IQCF3P0C7M6 154 aa15.32■□□□□ 0.04
SS18-201ENST00000269137 CYP2C9P11712 490 aa15.32■□□□□ 0.04
SS18-201ENST00000269137 UCHL3P15374 230 aa15.32■□□□□ 0.04
SS18-201ENST00000269137 CST5P28325 142 aaPredicted RBP15.32■□□□□ 0.04
SS18-201ENST00000269137 MATR3P43243 847 aaKnown RBP eCLIP15.32■□□□□ 0.049e-6■■■■□ 21.7
SS18-201ENST00000269137 GCLMP48507 274 aa15.32■□□□□ 0.04
SS18-201ENST00000269137 CHMP4BP1P59074 171 aa15.32■□□□□ 0.04
SS18-201ENST00000269137 HIC1Q14526 733 aa15.32■□□□□ 0.04
SS18-201ENST00000269137 TRIP12Q14669 1992 aaPredicted RBP15.32■□□□□ 0.04
SS18-201ENST00000269137 ATF7IP2Q5U623 682 aa15.32■□□□□ 0.04
SS18-201ENST00000269137 MPZL3Q6UWV2 235 aa15.32■□□□□ 0.04
SS18-201ENST00000269137 RAD9BQ6WBX8 426 aa15.32■□□□□ 0.04
SS18-201ENST00000269137 C7orf31Q8N865 590 aa15.32■□□□□ 0.04
SS18-201ENST00000269137 EHBP1Q8NDI1 1231 aa15.32■□□□□ 0.04
SS18-201ENST00000269137 LMO3Q8TAP4 145 aa15.32■□□□□ 0.04
SS18-201ENST00000269137 NLRP7Q8WX94 980 aa15.32■□□□□ 0.04
SS18-201ENST00000269137 CCDC127Q96BQ5 260 aa15.32■□□□□ 0.04
SS18-201ENST00000269137 TMEM117Q9H0C3 514 aa15.32■□□□□ 0.04
SS18-201ENST00000269137 ADAMTS10Q9H324 1103 aa15.32■□□□□ 0.04
SS18-201ENST00000269137 TMEM8AQ9HCN3 771 aa15.32■□□□□ 0.04
SS18-201ENST00000269137 HDAC6Q9UBN7 1215 aa15.32■□□□□ 0.04
SS18-201ENST00000269137 CNTNAP2Q9UHC6 1331 aa15.31■□□□□ 0.04
SS18-201ENST00000269137 C17orf102A2RUQ5 167 aa15.31■□□□□ 0.04
SS18-201ENST00000269137 OGTO15294 1046 aa15.31■□□□□ 0.04
SS18-201ENST00000269137 ACTN1P12814 892 aa15.31■□□□□ 0.04
SS18-201ENST00000269137 ACOT2P49753 483 aa15.31■□□□□ 0.04
SS18-201ENST00000269137 MXI1P50539 228 aa15.31■□□□□ 0.04
SS18-201ENST00000269137 APBA1Q02410 837 aa15.31■□□□□ 0.04
SS18-201ENST00000269137 EPC2Q52LR7 807 aa15.31■□□□□ 0.04
SS18-201ENST00000269137 CHP1Q99653 195 aa15.31■□□□□ 0.04
SS18-201ENST00000269137 TCHPQ9BT92 498 aa15.31■□□□□ 0.04
SS18-201ENST00000269137 INTS2Q9H0H0 1204 aaKnown RBP15.31■□□□□ 0.04
SS18-201ENST00000269137 NLRC4Q9NPP4 1024 aa15.31■□□□□ 0.04
SS18-201ENST00000269137 COQ4Q9Y3A0 265 aa15.31■□□□□ 0.04
SS18-201ENST00000269137 LRRC53A6NM62 1247 aa15.31■□□□□ 0.04
SS18-201ENST00000269137 GPR32O75388 356 aa15.31■□□□□ 0.04
SS18-201ENST00000269137 PCBP1Q15365 356 aaKnown RBP eCLIP15.31■□□□□ 0.04
SS18-201ENST00000269137 KRT39Q6A163 491 aa15.31■□□□□ 0.04
SS18-201ENST00000269137 CCSAPQ6IQ19 270 aaPredicted RBP15.31■□□□□ 0.04
SS18-201ENST00000269137 NME8Q8N427 588 aa15.31■□□□□ 0.04
SS18-201ENST00000269137 SLAIN1Q8ND83 568 aa15.31■□□□□ 0.04
SS18-201ENST00000269137 FAM49AQ9H0Q0 323 aaPredicted RBP15.31■□□□□ 0.04
SS18-201ENST00000269137 RBAKQ9NYW8 714 aaPredicted RBP15.31■□□□□ 0.04
SS18-201ENST00000269137 DDX20Q9UHI6 824 aaKnown RBP15.31■□□□□ 0.04
SS18-201ENST00000269137 TREHO43280 583 aa15.3■□□□□ 0.04
SS18-201ENST00000269137 B4GALT5O43286 388 aa15.3■□□□□ 0.04
SS18-201ENST00000269137 ZSCAN12O43309 604 aa15.3■□□□□ 0.04
SS18-201ENST00000269137 RFX1P22670 979 aa15.3■□□□□ 0.04
SS18-201ENST00000269137 MTF1Q14872 753 aa15.3■□□□□ 0.04
SS18-201ENST00000269137 ZBTB41Q5SVQ8 909 aa15.3■□□□□ 0.04
SS18-201ENST00000269137 CXCL17Q6UXB2 119 aa15.3■□□□□ 0.04
SS18-201ENST00000269137 RUFY4Q6ZNE9 571 aa15.3■□□□□ 0.04
SS18-201ENST00000269137 TOGARAM2Q6ZUX3 1019 aa15.3■□□□□ 0.04
SS18-201ENST00000269137 BRSK2Q8IWQ3 736 aa15.3■□□□□ 0.04
SS18-201ENST00000269137 CCDC170Q8IYT3 715 aa15.3■□□□□ 0.04
SS18-201ENST00000269137 SCLT1Q96NL6 688 aa15.3■□□□□ 0.04
SS18-201ENST00000269137 GCOM2Q9BZD3 368 aaPredicted RBP15.3■□□□□ 0.04
SS18-201ENST00000269137 AIPL1Q9NZN9 384 aa15.3■□□□□ 0.04
SS18-201ENST00000269137 PPP2R2CQ9Y2T4 447 aa15.3■□□□□ 0.04
SS18-201ENST00000269137 FHOD1Q9Y613 1164 aa15.3■□□□□ 0.04
SS18-201ENST00000269137 USP27XA6NNY8 438 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 OFD1O75665 1012 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 DLATP10515 647 aaKnown RBP15.29■□□□□ 0.04
SS18-201ENST00000269137 JAM2P57087 298 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 POU5F1Q01860 360 aaKnown RBP15.29■□□□□ 0.04
SS18-201ENST00000269137 NBPF20Q3BBV1 942 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 SFMBT2Q5VUG0 894 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 TAF2Q6P1X5 1199 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 C15orf39Q6ZRI6 1047 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 SV2AQ7L0J3 742 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 ZBTB33Q86T24 672 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms