RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 CLDN3O15551 220 aa17.89■□□□□ 0.46
USP4-201ENST00000265560 KIF5CO60282 957 aa17.89■□□□□ 0.46
USP4-201ENST00000265560 PRKCBP05771 671 aa17.89■□□□□ 0.46
USP4-201ENST00000265560 ZNF200P98182 395 aaPredicted RBP17.89■□□□□ 0.46
USP4-201ENST00000265560 DGKDQ16760 1214 aa17.89■□□□□ 0.46
USP4-201ENST00000265560 IQSEC1Q6DN90 963 aa17.89■□□□□ 0.46
USP4-201ENST00000265560 EHBP1Q8NDI1 1231 aa17.89■□□□□ 0.46
USP4-201ENST00000265560 HVCN1Q96D96 273 aa17.89■□□□□ 0.46
USP4-201ENST00000265560 APEX2Q9UBZ4 518 aa17.89■□□□□ 0.46
USP4-201ENST00000265560 LOC102724159A0A0B4J2E5 919 aa17.89■□□□□ 0.45
USP4-201ENST00000265560 EIF3CLB5ME19 914 aaKnown RBP17.89■□□□□ 0.45
USP4-201ENST00000265560 FOXN3O00409 490 aaPredicted RBP17.89■□□□□ 0.45
USP4-201ENST00000265560 SREBF2Q12772 1141 aa17.89■□□□□ 0.45
USP4-201ENST00000265560 MYBPC2Q14324 1141 aa17.89■□□□□ 0.45
USP4-201ENST00000265560 PWP2Q15269 919 aaKnown RBP17.89■□□□□ 0.45
USP4-201ENST00000265560 SV2AQ7L0J3 742 aa17.89■□□□□ 0.45
USP4-201ENST00000265560 EIF3CQ99613 913 aaKnown RBP17.89■□□□□ 0.45
USP4-201ENST00000265560 SERPING1P05155 500 aa17.89■□□□□ 0.45
USP4-201ENST00000265560 SLC26A2P50443 739 aa17.89■□□□□ 0.45
USP4-201ENST00000265560 MAPK6Q16659 721 aa17.89■□□□□ 0.45
USP4-201ENST00000265560 KIAA0753Q2KHM9 967 aa17.89■□□□□ 0.45
USP4-201ENST00000265560 EEF1DP3Q658K8 133 aa17.89■□□□□ 0.45
USP4-201ENST00000265560 TATDN2Q93075 761 aa17.89■□□□□ 0.45
USP4-201ENST00000265560 CPB2Q96IY4 423 aa17.89■□□□□ 0.45
USP4-201ENST00000265560 CGNQ9P2M7 1197 aaKnown RBP17.89■□□□□ 0.45
USP4-201ENST00000265560 SALL4Q9UJQ4 1053 aa17.89■□□□□ 0.45
USP4-201ENST00000265560 MAGEA1P43355 309 aa17.88■□□□□ 0.45
USP4-201ENST00000265560 INHBEP58166 350 aa17.88■□□□□ 0.45
USP4-201ENST00000265560 MXD4Q14582 209 aaPredicted RBP17.88■□□□□ 0.45
USP4-201ENST00000265560 GRIK4Q16099 956 aa17.88■□□□□ 0.45
USP4-201ENST00000265560 MARCH8Q5T0T0 291 aa17.88■□□□□ 0.45
USP4-201ENST00000265560 CCDC170Q8IYT3 715 aa17.88■□□□□ 0.45
USP4-201ENST00000265560 MYRIPQ8NFW9 859 aa17.88■□□□□ 0.45
USP4-201ENST00000265560 TCP11Q8WWU5 503 aa17.88■□□□□ 0.45
USP4-201ENST00000265560 PRIMPOLQ96LW4 560 aa17.88■□□□□ 0.45
USP4-201ENST00000265560 FBXL18Q96ME1 805 aa17.88■□□□□ 0.45
USP4-201ENST00000265560 ZNF215Q9UL58 517 aaPredicted RBP17.88■□□□□ 0.45
USP4-201ENST00000265560 EVI5O60447 810 aa17.88■□□□□ 0.45
USP4-201ENST00000265560 MYL3P08590 195 aa17.88■□□□□ 0.45
USP4-201ENST00000265560 GARTP22102 1010 aa17.88■□□□□ 0.45
USP4-201ENST00000265560 HIC1Q14526 733 aa17.88■□□□□ 0.45
USP4-201ENST00000265560 KIZQ2M2Z5 673 aa17.88■□□□□ 0.45
USP4-201ENST00000265560 ASTE1Q2TB18 679 aaPredicted RBP17.88■□□□□ 0.45
USP4-201ENST00000265560 SPOPLQ6IQ16 392 aa17.88■□□□□ 0.45
USP4-201ENST00000265560 TMEM192Q8IY95 271 aa17.88■□□□□ 0.45
USP4-201ENST00000265560 DHX38Q92620 1227 aaKnown RBP17.88■□□□□ 0.45
USP4-201ENST00000265560 USP6NLQ92738 828 aa17.88■□□□□ 0.45
USP4-201ENST00000265560 MFSD14AQ96MC6 490 aa17.88■□□□□ 0.45
USP4-201ENST00000265560 FNBP1Q96RU3 617 aa17.88■□□□□ 0.45
USP4-201ENST00000265560 EDEM3Q9BZQ6 932 aa17.88■□□□□ 0.45
USP4-201ENST00000265560 IFT122Q9HBG6 1241 aa17.88■□□□□ 0.45
USP4-201ENST00000265560 SEPT11Q9NVA2 429 aaKnown RBP17.88■□□□□ 0.45
USP4-201ENST00000265560 RBAKQ9NYW8 714 aaPredicted RBP17.88■□□□□ 0.45
USP4-201ENST00000265560 GNEQ9Y223 722 aaKnown RBP17.88■□□□□ 0.45
USP4-201ENST00000265560 LAMA2P24043 3122 aaKnown RBP17.88■□□□□ 0.45
USP4-201ENST00000265560 MYADML2A6NDP7 307 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 GOLGA6L9A6NEM1 432 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 CA12O43570 354 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 BUB1O43683 1085 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 EXTL3O43909 919 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 RGS2P41220 211 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 FLT3LGP49771 235 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 KRT83P78385 493 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 ZBTB8OSQ8IWT0 167 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 GPR88Q9GZN0 384 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 AIPL1Q9NZN9 384 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 HDAC6Q9UBN7 1215 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 A0A0B4J269 797 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 GTPBP10A4D1E9 387 aaKnown RBP17.87■□□□□ 0.45
USP4-201ENST00000265560 F8VZ95 297 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 H0YCG3 227 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 JAM2P57087 298 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 BIRC3Q13489 604 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 PTPROQ16827 1216 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 EPC2Q52LR7 807 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 MTHFD1LQ6UB35 978 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 OR5B17Q8NGF7 314 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 NLRP7Q8WX94 980 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 IQCDQ96DY2 449 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 ARID3AQ99856 593 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 CDK17Q00537 523 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 TRPV1Q8NER1 839 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 LMBR1Q8WVP7 490 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 ACO2Q99798 780 aaKnown RBP17.87■□□□□ 0.45
USP4-201ENST00000265560 CCDC113Q9H0I3 377 aa17.87■□□□□ 0.45
USP4-201ENST00000265560 KIF2AO00139 706 aaPredicted RBP17.86■□□□□ 0.45
USP4-201ENST00000265560 TRPA1O75762 1119 aa17.86■□□□□ 0.45
USP4-201ENST00000265560 PGK1P00558 417 aa17.86■□□□□ 0.45
USP4-201ENST00000265560 ELNP15502 786 aa17.86■□□□□ 0.45
USP4-201ENST00000265560 TM4SF4P48230 202 aa17.86■□□□□ 0.45
USP4-201ENST00000265560 PRKCZQ05513 592 aa17.86■□□□□ 0.45
USP4-201ENST00000265560 KRT39Q6A163 491 aa17.86■□□□□ 0.45
USP4-201ENST00000265560 KAT2BQ92831 832 aa17.86■□□□□ 0.45
USP4-201ENST00000265560 EMID1Q96A84 441 aaPredicted RBP17.86■□□□□ 0.45
USP4-201ENST00000265560 RNF19AQ9NV58 838 aa17.86■□□□□ 0.45
USP4-201ENST00000265560 MOCS3O95396 460 aa17.86■□□□□ 0.45
USP4-201ENST00000265560 NAP1L1P55209 391 aaKnown RBP17.86■□□□□ 0.45
USP4-201ENST00000265560 CETN1Q12798 172 aa17.86■□□□□ 0.45
USP4-201ENST00000265560 KIF5AQ12840 1032 aa17.86■□□□□ 0.45
USP4-201ENST00000265560 PALB2Q86YC2 1186 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms