RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 TERF2Q15554 542 aa13.97□□□□□ -0.17
SPTLC1-201ENST00000262554 C9orf131Q5VYM1 1079 aa13.97□□□□□ -0.17
SPTLC1-201ENST00000262554 FAM71AQ8IYT1 594 aa13.97□□□□□ -0.17
SPTLC1-201ENST00000262554 USP38Q8NB14 1042 aa13.97□□□□□ -0.17
SPTLC1-201ENST00000262554 HDAC7Q8WUI4 952 aa13.97□□□□□ -0.17
SPTLC1-201ENST00000262554 SLC20A1Q8WUM9 679 aa13.97□□□□□ -0.17
SPTLC1-201ENST00000262554 KCNN1Q92952 543 aa13.97□□□□□ -0.17
SPTLC1-201ENST00000262554 CALR3Q96L12 384 aaKnown RBP13.97□□□□□ -0.17
SPTLC1-201ENST00000262554 PDE11AQ9HCR9 933 aa13.97□□□□□ -0.17
SPTLC1-201ENST00000262554 RAB20Q9NX57 234 aa13.97□□□□□ -0.17
SPTLC1-201ENST00000262554 DMGDHQ9UI17 866 aaKnown RBP13.97□□□□□ -0.17
SPTLC1-201ENST00000262554 AMFRQ9UKV5 643 aa13.97□□□□□ -0.17
SPTLC1-201ENST00000262554 KCNH4Q9UQ05 1017 aa13.97□□□□□ -0.17
SPTLC1-201ENST00000262554 LRRIQ4A6NIV6 560 aa13.96□□□□□ -0.17
SPTLC1-201ENST00000262554 POLR3GO15318 223 aaPredicted RBP13.96□□□□□ -0.17
SPTLC1-201ENST00000262554 CNMDO75829 334 aa13.96□□□□□ -0.17
SPTLC1-201ENST00000262554 ARL2P36404 184 aa13.96□□□□□ -0.17
SPTLC1-201ENST00000262554 STAT5BP51692 787 aa13.96□□□□□ -0.17
SPTLC1-201ENST00000262554 TNNC1P63316 161 aa13.96□□□□□ -0.17
SPTLC1-201ENST00000262554 DPY19L2Q6NUT2 758 aa13.96□□□□□ -0.17
SPTLC1-201ENST00000262554 USP50Q70EL3 339 aaPredicted RBP13.96□□□□□ -0.17
SPTLC1-201ENST00000262554 NT5DC3Q86UY8 548 aa13.96□□□□□ -0.17
SPTLC1-201ENST00000262554 RPUSD2Q8IZ73 545 aaKnown RBP13.96□□□□□ -0.17
SPTLC1-201ENST00000262554 SHC3Q92529 594 aa13.96□□□□□ -0.17
SPTLC1-201ENST00000262554 KAT5Q92993 513 aa13.96□□□□□ -0.17
SPTLC1-201ENST00000262554 KREMEN1Q96MU8 473 aa13.96□□□□□ -0.17
SPTLC1-201ENST00000262554 GOLPH3Q9H4A6 298 aa13.96□□□□□ -0.17
SPTLC1-201ENST00000262554 TOPORSQ9NS56 1045 aaPredicted RBP13.96□□□□□ -0.17
SPTLC1-201ENST00000262554 TAS2R14Q9NYV8 317 aa13.96□□□□□ -0.17
SPTLC1-201ENST00000262554 STXBP5LQ9Y2K9 1186 aa13.96□□□□□ -0.17
SPTLC1-201ENST00000262554 K7ERI5 159 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 CEP104O60308 925 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 OSBPP22059 807 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 GLRA2P23416 452 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 SLC7A5Q01650 507 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 DMTNQ08495 405 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 SLFN12LQ6IEE8 588 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 KCNV1Q6PIU1 500 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 METTL7BQ6UX53 244 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 SV2AQ7L0J3 742 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.95□□□□□ -0.183e-6■□□□□ 8.4
SPTLC1-201ENST00000262554 FASTKD5Q7L8L6 764 aaKnown RBP13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 PALB2Q86YC2 1186 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 RHOT2Q8IXI1 618 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 ACTRT1Q8TDG2 376 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 ASAP3Q8TDY4 903 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 AFAP1L1Q8TED9 768 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 ZC3H15Q8WU90 426 aaKnown RBP13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 SEPT1Q8WYJ6 367 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 FAM81BQ96LP2 452 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 PCYT2Q99447 389 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 THAP2Q9H0W7 228 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 OSGEPQ9NPF4 335 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.95□□□□□ -0.183e-7■■■■■ 159.9
SPTLC1-201ENST00000262554 H3BQF6 201 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 PGRMC1O00264 195 aaKnown RBP13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 BUB1BO60566 1050 aaPredicted RBP13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 ZC3H11AO75152 810 aaKnown RBP eCLIP13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 RTN2O75298 545 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 SGPL1O95470 568 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 GGPS1O95749 300 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 PIGRP01833 764 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 FTLP02792 175 aaPredicted RBP13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 MYBL2P10244 700 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 TNFRSF8P28908 595 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 TCF7P36402 384 aaPredicted RBP13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 RNASE9P60153 205 aaKnown RBP13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 TARBP2Q15633 366 aaKnown RBP13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 HSP90B2PQ58FF3 399 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 MOB2Q70IA6 237 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 ENOSF1Q7L5Y1 443 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 HS6ST3Q8IZP7 471 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 METTL13Q8N6R0 699 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 HELQQ8TDG4 1101 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 TAS1R2Q8TE23 839 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 EPS8L1Q8TE68 723 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 AENQ8WTP8 325 aaKnown RBP13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 HES6Q96HZ4 224 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 FAM167AQ96KS9 214 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 CEP89Q96ST8 783 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 ISCUQ9H1K1 167 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 AZI2Q9H6S1 392 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 NOCTQ9UK39 431 aaKnown RBP13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 AGO2Q9UKV8 859 aaKnown RBP13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 PPME1Q9Y570 386 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 STYXL1Q9Y6J8 313 aa13.95□□□□□ -0.18
SPTLC1-201ENST00000262554 CYP26A1O43174 497 aa13.94□□□□□ -0.18
SPTLC1-201ENST00000262554 CHRM1P11229 460 aaPredicted RBP13.94□□□□□ -0.18
SPTLC1-201ENST00000262554 GZMAP12544 262 aa13.94□□□□□ -0.18
SPTLC1-201ENST00000262554 HADHBP55084 474 aaKnown RBP13.94□□□□□ -0.18
SPTLC1-201ENST00000262554 PRPF4BQ13523 1007 aaKnown RBP13.94□□□□□ -0.18
SPTLC1-201ENST00000262554 KCTD2Q14681 263 aa13.94□□□□□ -0.18
SPTLC1-201ENST00000262554 PSMD6Q15008 389 aa13.94□□□□□ -0.18
SPTLC1-201ENST00000262554 PTPROQ16827 1216 aa13.94□□□□□ -0.18
SPTLC1-201ENST00000262554 EEPD1Q7L9B9 569 aa13.94□□□□□ -0.18
SPTLC1-201ENST00000262554 ARMC9Q7Z3E5 817 aa13.94□□□□□ -0.18
SPTLC1-201ENST00000262554 NOP9Q86U38 636 aaKnown RBP13.94□□□□□ -0.18
SPTLC1-201ENST00000262554 IFT20Q8IY31 132 aa13.94□□□□□ -0.18
SPTLC1-201ENST00000262554 GSPT2Q8IYD1 628 aaKnown RBP13.94□□□□□ -0.18
SPTLC1-201ENST00000262554 PSPC1Q8WXF1 523 aaKnown RBP13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms