RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ZNF394Q53GI3 561 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 JRKLQ9Y4A0 524 aa12.47□□□□□ -0.41
VPS4A-201ENST00000254950 SPDYE4A6NLX3 237 aa12.46□□□□□ -0.41
VPS4A-201ENST00000254950 MOCS3O95396 460 aa12.46□□□□□ -0.41
VPS4A-201ENST00000254950 HOXC6P09630 235 aa12.46□□□□□ -0.41
VPS4A-201ENST00000254950 PTPROQ16827 1216 aa12.46□□□□□ -0.41
VPS4A-201ENST00000254950 GSTA5Q7RTV2 222 aa12.46□□□□□ -0.41
VPS4A-201ENST00000254950 METTL23Q86XA0 190 aa12.46□□□□□ -0.41
VPS4A-201ENST00000254950 MAP4K3Q8IVH8 894 aa12.46□□□□□ -0.41
VPS4A-201ENST00000254950 TTC39CQ8N584 583 aa12.46□□□□□ -0.41
VPS4A-201ENST00000254950 TMC2Q8TDI7 906 aa12.46□□□□□ -0.41
VPS4A-201ENST00000254950 ZBTB9Q96C00 473 aa12.46□□□□□ -0.41
VPS4A-201ENST00000254950 ENC1O14682 589 aa12.46□□□□□ -0.41
VPS4A-201ENST00000254950 HLA-DRAP01903 254 aa12.46□□□□□ -0.41
VPS4A-201ENST00000254950 CLTAP09496 248 aa12.46□□□□□ -0.41
VPS4A-201ENST00000254950 ANXA13P27216 316 aa12.46□□□□□ -0.41
VPS4A-201ENST00000254950 BMS1Q14692 1282 aaKnown RBP12.46□□□□□ -0.41
VPS4A-201ENST00000254950 CDR2LQ86X02 465 aaPredicted RBP12.46□□□□□ -0.41
VPS4A-201ENST00000254950 PCSK9Q8NBP7 692 aaKnown RBP12.46□□□□□ -0.41
VPS4A-201ENST00000254950 MAK16Q9BXY0 300 aaKnown RBP12.46□□□□□ -0.41
VPS4A-201ENST00000254950 MRPL47Q9HD33 250 aaKnown RBP12.46□□□□□ -0.41
VPS4A-201ENST00000254950 SETD4Q9NVD3 440 aa12.46□□□□□ -0.41
VPS4A-201ENST00000254950 SP3Q02447 781 aa12.46□□□□□ -0.42
VPS4A-201ENST00000254950 GJC2Q5T442 439 aaPredicted RBP12.46□□□□□ -0.42
VPS4A-201ENST00000254950 E4F1Q66K89 784 aaPredicted RBP12.46□□□□□ -0.42
VPS4A-201ENST00000254950 FOXR2Q6PJQ5 311 aa12.46□□□□□ -0.42
VPS4A-201ENST00000254950 HOOK3Q86VS8 718 aa12.46□□□□□ -0.42
VPS4A-201ENST00000254950 RHOT2Q8IXI1 618 aa12.46□□□□□ -0.42
VPS4A-201ENST00000254950 PDGFCQ9NRA1 345 aa12.46□□□□□ -0.42
VPS4A-201ENST00000254950 MYH6P13533 1939 aa12.46□□□□□ -0.42
VPS4A-201ENST00000254950 RPS6KA5O75582 802 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 VTNP04004 478 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 KCNA1Q09470 495 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 IFFO1Q0D2I5 559 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 NOTUMQ6P988 496 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 MPZL3Q6UWV2 235 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 RPUSD2Q8IZ73 545 aaKnown RBP12.45□□□□□ -0.42
VPS4A-201ENST00000254950 TMEM35BQ8NCS4 154 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 HEXIM2Q96MH2 286 aaKnown RBP12.45□□□□□ -0.42
VPS4A-201ENST00000254950 PLAGL2Q9UPG8 496 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 A0A087WZ62 844 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 KIZQ2M2Z5 673 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 HSDL1Q3SXM5 330 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 RAD9BQ6WBX8 426 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 ZPBP2Q6X784 338 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 GLYCTKQ8IVS8 523 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 OR6B3Q8NGW1 331 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 MAIP1Q8WWC4 291 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 FDXACB1Q9BRP7 624 aaPredicted RBP12.45□□□□□ -0.42
VPS4A-201ENST00000254950 TXNRD2Q9NNW7 524 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 PLCB1Q9NQ66 1216 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 USP27XA6NNY8 438 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 RTP1P59025 263 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 GTF2BQ00403 316 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 SPIRE1Q08AE8 756 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 TMEM132DQ14C87 1099 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 TRIM65Q6PJ69 517 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 DSTYKQ6XUX3 929 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 LRRC55Q6ZSA7 311 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 SYN2Q92777 582 aaPredicted RBP12.45□□□□□ -0.42
VPS4A-201ENST00000254950 A0A1B0GUL6 1792 aa12.45□□□□□ -0.42
VPS4A-201ENST00000254950 GTPBP10A4D1E9 387 aaKnown RBP12.44□□□□□ -0.42
VPS4A-201ENST00000254950 EVI5O60447 810 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 RNF8O76064 485 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 PPP1R7Q15435 360 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 FSCN1Q16658 493 aaKnown RBP12.44□□□□□ -0.42
VPS4A-201ENST00000254950 HADHQ16836 314 aaKnown RBP12.44□□□□□ -0.42
VPS4A-201ENST00000254950 SGSM1Q2NKQ1 1148 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 DUSP28Q4G0W2 176 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 PRAMEF19Q5SWL8 479 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 DNAJC24Q6P3W2 148 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 MTG1Q9BT17 334 aaPredicted RBP12.44□□□□□ -0.42
VPS4A-201ENST00000254950 INPP5FQ9Y2H2 1132 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 RPLP2P05387 115 aaKnown RBP12.44□□□□□ -0.42
VPS4A-201ENST00000254950 PON1P27169 355 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 RBP5P82980 135 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 MFSD10Q14728 455 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 BMT2Q1RMZ1 405 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 WDR72Q3MJ13 1102 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 CYP4F22Q6NT55 531 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 RNF10Q8N5U6 811 aaKnown RBP12.44□□□□□ -0.42
VPS4A-201ENST00000254950 GPR20Q99678 358 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 AGAP1Q9UPQ3 857 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 DIS3Q9Y2L1 958 aaKnown RBP12.44□□□□□ -0.42
VPS4A-201ENST00000254950 SRCAPQ6ZRS2 3230 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 HUS1O60921 280 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 MAFO75444 373 aaPredicted RBP12.44□□□□□ -0.42
VPS4A-201ENST00000254950 GTF2H1P32780 548 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 PSEN2P49810 448 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 PLCB4Q15147 1175 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 ELF2Q15723 593 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 SLC18A3Q16572 532 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 LONRF2Q1L5Z9 754 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 KLHL7Q8IXQ5 586 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 MSL3Q8N5Y2 521 aaKnown RBP12.44□□□□□ -0.42
VPS4A-201ENST00000254950 TMEM161BQ8NDZ6 487 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 IFT81Q8WYA0 676 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 CCDC114Q96M63 670 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 ZNF560Q96MR9 790 aa12.44□□□□□ -0.42
VPS4A-201ENST00000254950 ADAM22Q9P0K1 906 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms