RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 CASP4P49662 377 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 ODR4Q5SWX8 454 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 MIS18BP1Q6P0N0 1132 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 ARNTL2Q8WYA1 636 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 ZNF302Q9NR11 478 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 ADAMTS1Q9UHI8 967 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 COL4A3BPQ9Y5P4 624 aa9.43□□□□□ -0.9
VPS4B-201ENST00000238497 NRCAMQ92823 1304 aa9.42□□□□□ -0.9
VPS4B-201ENST00000238497 ARHGEF35A5YM69 484 aa9.42□□□□□ -0.9
VPS4B-201ENST00000238497 NBNO60934 754 aa9.42□□□□□ -0.9
VPS4B-201ENST00000238497 MOCS3O95396 460 aa9.42□□□□□ -0.9
VPS4B-201ENST00000238497 RFC2P35250 354 aa9.42□□□□□ -0.9
VPS4B-201ENST00000238497 USP11P51784 963 aa9.42□□□□□ -0.9
VPS4B-201ENST00000238497 NFX1Q12986 1120 aaKnown RBP9.42□□□□□ -0.9
VPS4B-201ENST00000238497 SERINC5Q86VE9 423 aa9.42□□□□□ -0.9
VPS4B-201ENST00000238497 SESTD1Q86VW0 696 aa9.42□□□□□ -0.9
VPS4B-201ENST00000238497 GUCD1Q96NT3 240 aa9.42□□□□□ -0.9
VPS4B-201ENST00000238497 NAA15Q9BXJ9 866 aaKnown RBP9.42□□□□□ -0.9
VPS4B-201ENST00000238497 KDM3AQ9Y4C1 1321 aa9.42□□□□□ -0.9
VPS4B-201ENST00000238497 KIAA1217Q5T5P2 1943 aa9.42□□□□□ -0.9
VPS4B-201ENST00000238497 LRRC37A2A6NM11 1700 aa9.42□□□□□ -0.9
VPS4B-201ENST00000238497 CTAGE15A4D2H0 777 aa9.42□□□□□ -0.9
VPS4B-201ENST00000238497 CCDC169A6NNP5 214 aa9.42□□□□□ -0.9
VPS4B-201ENST00000238497 MYL1P05976 194 aa9.42□□□□□ -0.9
VPS4B-201ENST00000238497 CTAGE8P0CG41 777 aa9.42□□□□□ -0.9
VPS4B-201ENST00000238497 MAN2A1Q16706 1144 aa9.42□□□□□ -0.9
VPS4B-201ENST00000238497 ARHGAP44Q17R89 818 aa9.42□□□□□ -0.9
VPS4B-201ENST00000238497 MCTP2Q6DN12 878 aa9.42□□□□□ -0.9
VPS4B-201ENST00000238497 CTAGE6Q86UF2 777 aa9.42□□□□□ -0.9
VPS4B-201ENST00000238497 CTAGE4Q8IX94 777 aa9.42□□□□□ -0.9
VPS4B-201ENST00000238497 GUF1Q8N442 669 aaKnown RBP9.42□□□□□ -0.9
VPS4B-201ENST00000238497 SEPT8Q92599 483 aa9.42□□□□□ -0.9
VPS4B-201ENST00000238497 ZNF668Q96K58 619 aaPredicted RBP9.42□□□□□ -0.9
VPS4B-201ENST00000238497 GABBR1Q9UBS5 961 aa9.42□□□□□ -0.9
VPS4B-201ENST00000238497 PVALEFA0A1B0GWK0 134 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 RCCD1A6NED2 376 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 NCK2O43639 380 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 HOXD8P13378 290 aaPredicted RBP9.41□□□□□ -0.9
VPS4B-201ENST00000238497 SLC9A1P19634 815 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 PBX1P40424 430 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 CLK2P49760 499 aaKnown RBP9.41□□□□□ -0.9
VPS4B-201ENST00000238497 KRT83P78385 493 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 DEFB103AP81534 67 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 SETQ01105 290 aaPredicted RBP9.41□□□□□ -0.9
VPS4B-201ENST00000238497 CCDC181Q5TID7 509 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 GPR153Q6NV75 609 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 GJB7Q6PEY0 223 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 RUFY4Q6ZNE9 571 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 MIER3Q7Z3K6 550 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 SCFD1Q8WVM8 642 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 GOLGA1Q92805 767 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 DNAJC19Q96DA6 116 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 PARD6BQ9BYG5 372 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 GOLPH3Q9H4A6 298 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 SUGCTQ9HAC7 445 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 MAGEF1Q9HAY2 307 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 TBC1D22BQ9NU19 505 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 ARMCX3Q9UH62 379 aaPredicted RBP9.41□□□□□ -0.9
VPS4B-201ENST00000238497 YBX2Q9Y2T7 364 aaKnown RBP9.41□□□□□ -0.9
VPS4B-201ENST00000238497 PHLPP2Q6ZVD8 1323 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 BRWD1Q9NSI6 2320 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 GOLGA8IPA6NC78 632 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 LRRC10BA6NIK2 292 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 GOLGA8JA6NMD2 632 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 RFXAPO00287 272 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 LGR5O75473 907 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 CCNE2O96020 404 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 ATP1A1P05023 1023 aaKnown RBP9.41□□□□□ -0.9
VPS4B-201ENST00000238497 GYS2P54840 703 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 ZBED6P86452 979 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 KCNH2Q12809 1159 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 TRIM14Q14142 442 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 ARSHQ5FYA8 562 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 CT47A1Q5JQC4 288 aaPredicted RBP9.41□□□□□ -0.9
VPS4B-201ENST00000238497 CENPPQ6IPU0 288 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 CNKSR3Q6P9H4 555 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 WDR59Q6PJI9 974 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 CCDC60Q8IWA6 550 aaPredicted RBP9.41□□□□□ -0.9
VPS4B-201ENST00000238497 FAM178BQ8IXR5 827 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 MAFAQ8NHW3 353 aaPredicted RBP9.41□□□□□ -0.9
VPS4B-201ENST00000238497 ANKRD7Q92527 254 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 EHD2Q9NZN4 543 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 CAPN11Q9UMQ6 739 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 PACSIN2Q9UNF0 486 aaPredicted RBP9.41□□□□□ -0.9
VPS4B-201ENST00000238497 EYSQ5T1H1 3165 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 PLCB4Q15147 1175 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 LLGL1Q15334 1064 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 MIIPQ5JXC2 388 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 TAF2Q6P1X5 1199 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 HERC6Q8IVU3 1022 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 CCDC51Q96ER9 411 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 TEKT3Q9BXF9 490 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 MYO6Q9UM54 1294 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 USP20Q9Y2K6 914 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 STXBP5LQ9Y2K9 1186 aa9.41□□□□□ -0.9
VPS4B-201ENST00000238497 TISP43B9A030 160 aa9.4□□□□□ -0.9
VPS4B-201ENST00000238497 PSAPP07602 524 aa9.4□□□□□ -0.9
VPS4B-201ENST00000238497 TRIM49P0CI25 452 aa9.4□□□□□ -0.9
VPS4B-201ENST00000238497 TRIM49CP0CI26 452 aa9.4□□□□□ -0.9
VPS4B-201ENST00000238497 KLRC1P26715 233 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms