RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 EBF2Q9HAK2 575 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 MTRF1LQ9UGC7 380 aaKnown RBP13.32□□□□□ -0.28
NUP88-201ENST00000225696 PSMD10O75832 226 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 HLA-DOAP06340 250 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 CETPP11597 493 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 NQO1P15559 274 aaKnown RBP13.32□□□□□ -0.28
NUP88-201ENST00000225696 MGAT5Q09328 741 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 ZNF268Q14587 947 aaPredicted RBP13.32□□□□□ -0.28
NUP88-201ENST00000225696 NFIL3Q16649 462 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 LRCH2Q5VUJ6 765 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 NUGGCQ68CJ6 796 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 CGB2Q6NT52 195 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 FITM2Q8N6M3 262 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 ANKLE1Q8NAG6 615 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 DCAF4Q8WV16 495 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 L3MBTL3Q96JM7 780 aaPredicted RBP13.32□□□□□ -0.28
NUP88-201ENST00000225696 GJD4Q96KN9 370 aaPredicted RBP13.32□□□□□ -0.28
NUP88-201ENST00000225696 CBWD1Q9BRT8 395 aa13.32□□□□□ -0.28
NUP88-201ENST00000225696 USP15Q9Y4E8 981 aaPredicted RBP13.32□□□□□ -0.28
NUP88-201ENST00000225696 MIF4GDA9UHW6 222 aaKnown RBP13.31□□□□□ -0.28
NUP88-201ENST00000225696 CYP26A1O43174 497 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 ONECUT3O60422 494 aaPredicted RBP13.31□□□□□ -0.28
NUP88-201ENST00000225696 SERPINB2P05120 415 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 GBP2P32456 591 aaPredicted RBP13.31□□□□□ -0.28
NUP88-201ENST00000225696 ZNF131P52739 623 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 RRP1BQ14684 758 aaKnown RBP13.31□□□□□ -0.28
NUP88-201ENST00000225696 CYP1B1Q16678 543 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 MFSD5Q6N075 450 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 EPS8L1Q8TE68 723 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 DYDC1Q8WWB3 177 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 RBM17Q96I25 401 aaKnown RBP13.31□□□□□ -0.28
NUP88-201ENST00000225696 FAXDC2Q96IV6 333 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 TRIM7Q9C029 511 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 LRRC4BQ9NT99 713 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 NOCTQ9UK39 431 aaKnown RBP13.31□□□□□ -0.28
NUP88-201ENST00000225696 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.31□□□□□ -0.28
NUP88-201ENST00000225696 RTN2O75298 545 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 ADRA2BP18089 450 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 PDE6CP51160 858 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 ICA1Q05084 483 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 NAA25Q14CX7 972 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 PPP2R5AQ15172 486 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 KYNUQ16719 465 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 SEL1L2Q5TEA6 688 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 SYDE2Q5VT97 1194 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 DAB2IPQ5VWQ8 1189 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 BTNL9Q6UXG8 535 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 MIGA2Q7L4E1 593 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 PRUNE1Q86TP1 453 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 SYCP3Q8IZU3 236 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 KREMEN1Q96MU8 473 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 FAM118BQ9BPY3 351 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 NUP85Q9BW27 656 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 KCNK9Q9NPC2 374 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 CHST7Q9NS84 486 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 NYAP2Q9P242 653 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 TBK1Q9UHD2 729 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 STK38LQ9Y2H1 464 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 MYH11P35749 1972 aa13.31□□□□□ -0.28
NUP88-201ENST00000225696 BTAF1O14981 1849 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 C10orf71Q711Q0 1435 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 A0A1W2PRG0 241 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 SPOPO43791 374 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 HIP1RO75146 1068 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 BBOX1O75936 387 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 CFBP00751 764 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 CYP3A4P08684 503 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 ARP10275 920 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 RIPK1Q13546 671 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 SLMAPQ14BN4 828 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 RNF207Q6ZRF8 634 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 PHLDB2Q86SQ0 1253 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 FAM84AQ96KN4 292 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 ZNF570Q96NI8 536 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 RPS6KC1Q96S38 1066 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 STRA6Q9BX79 667 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 FAM198AQ9UFP1 575 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 SIPA1L1O43166 1804 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 FOSP01100 380 aaPredicted RBP13.3□□□□□ -0.28
NUP88-201ENST00000225696 BCRP11274 1271 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 GYS1P13807 737 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 IVDP26440 423 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 VPS41P49754 854 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 FMO1Q01740 532 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 KRT17Q04695 432 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 BNIP1Q12981 228 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 EPC2Q52LR7 807 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 LLGL2Q6P1M3 1020 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 RHBDF2Q6PJF5 856 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 CRELD2Q6UXH1 353 aaPredicted RBP13.3□□□□□ -0.28
NUP88-201ENST00000225696 ERICH1Q86X53 443 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 ZNF564Q8TBZ8 553 aaPredicted RBP13.3□□□□□ -0.28
NUP88-201ENST00000225696 PSPC1Q8WXF1 523 aaKnown RBP13.3□□□□□ -0.28
NUP88-201ENST00000225696 CCDC17Q96LX7 622 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 UNC45AQ9H3U1 944 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 C15orf41Q9Y2V0 281 aa13.3□□□□□ -0.28
NUP88-201ENST00000225696 PASKQ96RG2 1323 aa13.29□□□□□ -0.28
NUP88-201ENST00000225696 GOLGA8IPA6NC78 632 aa13.29□□□□□ -0.28
NUP88-201ENST00000225696 GOLGA8JA6NMD2 632 aa13.29□□□□□ -0.28
NUP88-201ENST00000225696 KIF1CO43896 1103 aaKnown RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms