RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 MAFAQ8NHW3 353 aaPredicted RBP16.75■□□□□ 0.27
LIG1-219ENST00000600055 PPM1EQ8WY54 764 aa16.75■□□□□ 0.27
LIG1-219ENST00000600055 DDX12PQ92771 950 aa16.75■□□□□ 0.27
LIG1-219ENST00000600055 STAMQ92783 540 aa16.75■□□□□ 0.27
LIG1-219ENST00000600055 DHX58Q96C10 678 aa16.75■□□□□ 0.27
LIG1-219ENST00000600055 TRIM6Q9C030 488 aaPredicted RBP16.75■□□□□ 0.27
LIG1-219ENST00000600055 RSAD1Q9HA92 442 aa16.75■□□□□ 0.27
LIG1-219ENST00000600055 LARSQ9P2J5 1176 aaKnown RBP16.75■□□□□ 0.27
LIG1-219ENST00000600055 RWDD3Q9Y3V2 267 aa16.75■□□□□ 0.27
LIG1-219ENST00000600055 RBM19Q9Y4C8 960 aaKnown RBP16.75■□□□□ 0.27
LIG1-219ENST00000600055 ATP6V1DQ9Y5K8 247 aa16.75■□□□□ 0.27
LIG1-219ENST00000600055 FNDC1Q4ZHG4 1894 aaPredicted RBP16.74■□□□□ 0.27
LIG1-219ENST00000600055 TBCAO75347 108 aaKnown RBP16.74■□□□□ 0.27
LIG1-219ENST00000600055 RB1P06400 928 aa16.74■□□□□ 0.27
LIG1-219ENST00000600055 MAPTP10636 758 aaKnown RBP16.74■□□□□ 0.27
LIG1-219ENST00000600055 AKAP5P24588 427 aa16.74■□□□□ 0.27
LIG1-219ENST00000600055 PBX3P40426 434 aa16.74■□□□□ 0.27
LIG1-219ENST00000600055 SMTNP53814 917 aa16.74■□□□□ 0.27
LIG1-219ENST00000600055 NUCB2P80303 420 aa16.74■□□□□ 0.27
LIG1-219ENST00000600055 TPRNQ4KMQ1 711 aa16.74■□□□□ 0.27
LIG1-219ENST00000600055 NOMO2Q5JPE7 1267 aa16.74■□□□□ 0.27
LIG1-219ENST00000600055 ATF7IP2Q5U623 682 aa16.74■□□□□ 0.27
LIG1-219ENST00000600055 GLB1LQ6UWU2 654 aa16.74■□□□□ 0.27
LIG1-219ENST00000600055 LRRC43Q8N309 656 aa16.74■□□□□ 0.27
LIG1-219ENST00000600055 KLHL23Q8NBE8 558 aa16.74■□□□□ 0.27
LIG1-219ENST00000600055 COLGALT1Q8NBJ5 622 aa16.74■□□□□ 0.27
LIG1-219ENST00000600055 CNNM3Q8NE01 707 aa16.74■□□□□ 0.27
LIG1-219ENST00000600055 TARS2Q9BW92 718 aaKnown RBP16.74■□□□□ 0.27
LIG1-219ENST00000600055 PARVGQ9HBI0 331 aa16.74■□□□□ 0.27
LIG1-219ENST00000600055 GDPD2Q9HCC8 539 aa16.74■□□□□ 0.27
LIG1-219ENST00000600055 ALG13Q9NP73 1137 aaKnown RBP16.74■□□□□ 0.27
LIG1-219ENST00000600055 COL4A4P53420 1690 aaPredicted RBP16.73■□□□□ 0.27
LIG1-219ENST00000600055 GRM6O15303 877 aa16.73■□□□□ 0.27
LIG1-219ENST00000600055 POLR2DO15514 142 aaKnown RBP16.73■□□□□ 0.27
LIG1-219ENST00000600055 GTPBP6O43824 516 aaPredicted RBP16.73■□□□□ 0.27
LIG1-219ENST00000600055 CSPG5O95196 566 aa16.73■□□□□ 0.27
LIG1-219ENST00000600055 ITGB1P05556 798 aa16.73■□□□□ 0.27
LIG1-219ENST00000600055 POU3F3P20264 500 aaPredicted RBP16.73■□□□□ 0.27
LIG1-219ENST00000600055 NCKAP1LP55160 1127 aa16.73■□□□□ 0.27
LIG1-219ENST00000600055 DNAJC19Q96DA6 116 aa16.73■□□□□ 0.27
LIG1-219ENST00000600055 FIZ1Q96SL8 496 aa16.73■□□□□ 0.27
LIG1-219ENST00000600055 ACO2Q99798 780 aaKnown RBP16.73■□□□□ 0.27
LIG1-219ENST00000600055 C11orf84Q9BUA3 381 aaPredicted RBP16.73■□□□□ 0.27
LIG1-219ENST00000600055 PLVAPQ9BX97 442 aa16.73■□□□□ 0.27
LIG1-219ENST00000600055 TBC1D13Q9NVG8 400 aa16.73■□□□□ 0.27
LIG1-219ENST00000600055 MIOSQ9NXC5 875 aa16.73■□□□□ 0.27
LIG1-219ENST00000600055 FAM13BQ9NYF5 915 aa16.73■□□□□ 0.27
LIG1-219ENST00000600055 PLAGL2Q9UPG8 496 aa16.73■□□□□ 0.27
LIG1-219ENST00000600055 K7ENM7 598 aa16.72■□□□□ 0.27
LIG1-219ENST00000600055 TRAK2O60296 914 aa16.72■□□□□ 0.27
LIG1-219ENST00000600055 B4GALT3O60512 393 aa16.72■□□□□ 0.27
LIG1-219ENST00000600055 POMCP01189 267 aa16.72■□□□□ 0.27
LIG1-219ENST00000600055 LAG3P18627 525 aa16.72■□□□□ 0.27
LIG1-219ENST00000600055 NMT1P30419 496 aaKnown RBP16.72■□□□□ 0.27
LIG1-219ENST00000600055 MLH1P40692 756 aa16.72■□□□□ 0.27
LIG1-219ENST00000600055 HAUS6Q7Z4H7 955 aa16.72■□□□□ 0.27
LIG1-219ENST00000600055 SFR1Q86XK3 245 aa16.72■□□□□ 0.27
LIG1-219ENST00000600055 ZNF280BQ86YH2 543 aa16.72■□□□□ 0.27
LIG1-219ENST00000600055 ZBTB45Q96K62 511 aaPredicted RBP16.72■□□□□ 0.27
LIG1-219ENST00000600055 ZFP42Q96MM3 310 aa16.72■□□□□ 0.27
LIG1-219ENST00000600055 GAD1Q99259 594 aa16.72■□□□□ 0.27
LIG1-219ENST00000600055 MRPL9Q9BYD2 267 aaKnown RBP16.72■□□□□ 0.27
LIG1-219ENST00000600055 MRPL4Q9BYD3 311 aaKnown RBP16.72■□□□□ 0.27
LIG1-219ENST00000600055 NRDE2Q9H7Z3 1164 aa16.72■□□□□ 0.27
LIG1-219ENST00000600055 SNTG2Q9NY99 539 aa16.72■□□□□ 0.27
LIG1-219ENST00000600055 KLK14Q9P0G3 267 aa16.72■□□□□ 0.27
LIG1-219ENST00000600055 PARP2Q9UGN5 583 aa16.72■□□□□ 0.27
LIG1-219ENST00000600055 KCNG1Q9UIX4 513 aa16.72■□□□□ 0.27
LIG1-219ENST00000600055 TNFSF13BQ9Y275 285 aa16.72■□□□□ 0.27
LIG1-219ENST00000600055 PCDHB12Q9Y5F1 795 aa16.72■□□□□ 0.27
LIG1-219ENST00000600055 A0A1B0GVL5 298 aa16.71■□□□□ 0.27
LIG1-219ENST00000600055 ARL5CA6NH57 179 aa16.71■□□□□ 0.27
LIG1-219ENST00000600055 DNAJB1P25685 340 aa16.71■□□□□ 0.27
LIG1-219ENST00000600055 STRN3Q13033 797 aa16.71■□□□□ 0.27
LIG1-219ENST00000600055 ADALQ6DHV7 355 aa16.71■□□□□ 0.27
LIG1-219ENST00000600055 KCNT2Q6UVM3 1135 aa16.71■□□□□ 0.27
LIG1-219ENST00000600055 ZBTB33Q86T24 672 aa16.71■□□□□ 0.27
LIG1-219ENST00000600055 FAM178BQ8IXR5 827 aa16.71■□□□□ 0.27
LIG1-219ENST00000600055 IQUBQ8NA54 791 aa16.71■□□□□ 0.27
LIG1-219ENST00000600055 SPPL3Q8TCT6 385 aa16.71■□□□□ 0.27
LIG1-219ENST00000600055 URGCPQ8TCY9 931 aa16.71■□□□□ 0.27
LIG1-219ENST00000600055 P2RX5Q93086 422 aa16.71■□□□□ 0.27
LIG1-219ENST00000600055 ADPGKQ9BRR6 497 aa16.71■□□□□ 0.27
LIG1-219ENST00000600055 SCAND2PQ9GZW5 306 aaPredicted RBP16.71■□□□□ 0.27
LIG1-219ENST00000600055 GBP3Q9H0R5 595 aa16.71■□□□□ 0.27
LIG1-219ENST00000600055 CXCL16Q9H2A7 254 aa16.71■□□□□ 0.27
LIG1-219ENST00000600055 PTPRHQ9HD43 1115 aa16.71■□□□□ 0.27
LIG1-219ENST00000600055 UBN1Q9NPG3 1134 aa16.71■□□□□ 0.27
LIG1-219ENST00000600055 AAASQ9NRG9 546 aa16.71■□□□□ 0.27
LIG1-219ENST00000600055 KBTBD4Q9NVX7 518 aa16.71■□□□□ 0.27
LIG1-219ENST00000600055 TBC1D7Q9P0N9 293 aa16.71■□□□□ 0.27
LIG1-219ENST00000600055 KCNH3Q9ULD8 1083 aa16.71■□□□□ 0.27
LIG1-219ENST00000600055 GIT1Q9Y2X7 761 aa16.71■□□□□ 0.27
LIG1-219ENST00000600055 NLRC5Q86WI3 1866 aa16.71■□□□□ 0.27
LIG1-219ENST00000600055 KIAA1671Q9BY89 1806 aa16.7■□□□□ 0.26
LIG1-219ENST00000600055 RALGAPA2Q2PPJ7 1873 aa16.7■□□□□ 0.26
LIG1-219ENST00000600055 NT5C1B-RDH14C9J2C7 533 aa16.7■□□□□ 0.26
LIG1-219ENST00000600055 ABLIM1O14639 778 aa16.7■□□□□ 0.26
LIG1-219ENST00000600055 ZC3H11AO75152 810 aaKnown RBP eCLIP16.7■□□□□ 0.26
LIG1-219ENST00000600055 DDHD2O94830 711 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms