RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 ZDHHC14Q8IZN3 488 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 SIX5Q8N196 739 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 CCDC148Q8NFR7 591 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 BICD2Q8TD16 824 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 KCNB2Q92953 911 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 CPB2Q96IY4 423 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 APOL6Q9BWW8 343 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 EIF2AQ9BY44 585 aaKnown RBP9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 RNF26Q9BY78 433 aaPredicted RBP9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 KCNK12Q9HB15 430 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 MAN1C1Q9NR34 630 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 CYP26B1Q9NR63 512 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 DZANK1Q9NVP4 752 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 MARCH5Q9NX47 278 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 RGL1Q9NZL6 768 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 DDX25Q9UHL0 483 aaKnown RBP9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 PCDHA4Q9UN74 947 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 DMXL2Q8TDJ6 3036 aa9.69□□□□□ -0.86
SHKBP1-220ENST00000599716 A0A087WWV3 80 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 FAM205CA6NFA0 338 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 M0R2N6 131 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 LILRB3O75022 631 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 HMGB1P09429 215 aaKnown RBP9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 HOXA11P31270 313 aaPredicted RBP9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 OR1G1P47890 313 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 DNM2P50570 870 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 Q4G0T1 1027 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 CCDC149Q6ZUS6 474 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 CDR2LQ86X02 465 aaPredicted RBP9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 CCDC105Q8IYK2 499 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 BLIDQ8IZY5 108 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 PRPF31Q8WWY3 499 aaKnown RBP9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 RIN2Q8WYP3 895 aaPredicted RBP9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 ZFP42Q96MM3 310 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 AGXT2Q9BYV1 514 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 SLKQ9H2G2 1235 aaPredicted RBP9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 SFXN1Q9H9B4 322 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 RSAD1Q9HA92 442 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 CHST12Q9NRB3 414 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 AGPAT5Q9NUQ2 364 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 MIOSQ9NXC5 875 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 FBXL21Q9UKT6 434 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 VAV3Q9UKW4 847 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 CA14Q9ULX7 337 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 COL4A3BPQ9Y5P4 624 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 IRAK3Q9Y616 596 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 DOCK8Q8NF50 2099 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 ARID2Q68CP9 1835 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 HECTD1Q9ULT8 2610 aa9.68□□□□□ -0.86
SHKBP1-220ENST00000599716 CYP3A7-CYP3A51PA0A087WV96 503 aa9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 CCDC195A0A1B0GUA6 201 aa9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 KRBA1A5PL33 1030 aa9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 STK25O00506 426 aa9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 TEX28O15482 410 aa9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 RPL17P18621 184 aaKnown RBP9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 CYP3A7P24462 503 aa9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 GBP2P32456 591 aaPredicted RBP9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 MLH1P40692 756 aa9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 SCNN1GP51170 649 aa9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 POLGP54098 1239 aaPredicted RBP9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 PSMC5P62195 406 aa9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 CYP4A11Q02928 519 aa9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 SSRP1Q08945 709 aaKnown RBP9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 LAMTOR4Q0VGL1 99 aa9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 TDGQ13569 410 aa9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 CTTNQ14247 550 aaKnown RBP9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 BMS1Q14692 1282 aaKnown RBP9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 EARS2Q5JPH6 523 aaKnown RBP9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 ZNF410Q86VK4 478 aa9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 PALB2Q86YC2 1186 aa9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 RNF149Q8NC42 400 aa9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 SMG8Q8ND04 991 aaKnown RBP9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 URGCPQ8TCY9 931 aa9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 OXER1Q8TDS5 423 aa9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 CEP170P1Q96L14 293 aa9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 MBOAT7Q96N66 472 aa9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 MYADMQ96S97 322 aa9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 GAD1Q99259 594 aa9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 TRAIPQ9BWF2 469 aa9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 CDV3Q9UKY7 258 aaKnown RBP9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 FAN1Q9Y2M0 1017 aa9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 R4GN57 208 aa9.67□□□□□ -0.86
SHKBP1-220ENST00000599716 PRR5-ARHGAP8B1AHC4 643 aa9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 INPPL1O15357 1258 aa9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 ZNF623O75123 536 aa9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 ALDH2P05091 517 aa9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 DCNP07585 359 aaKnown RBP9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 AOC1P19801 751 aa9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 QARSP47897 775 aaKnown RBP9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 ARHGAP8P85298 464 aa9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 NONOQ15233 471 aaKnown RBP eCLIP9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 SPECC1Q5M775 1068 aa9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 NCAPH2Q6IBW4 605 aa9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 ZC3H14Q6PJT7 736 aaKnown RBP9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 FAM43BQ6ZT52 329 aaPredicted RBP9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 OTOP3Q7RTS5 596 aa9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 MRPL10Q7Z7H8 261 aaKnown RBP9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 PLCD3Q8N3E9 789 aa9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 DCLK2Q8N568 766 aa9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 DTWD2Q8NBA8 298 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms