RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 USP20Q9Y2K6 914 aa15.27■□□□□ 0.04
UPF1-205ENST00000598209 TRIP11Q15643 1979 aa15.27■□□□□ 0.03
UPF1-205ENST00000598209 SLC16A4O15374 487 aa15.26■□□□□ 0.03
UPF1-205ENST00000598209 CUTAO60888 179 aa15.26■□□□□ 0.03
UPF1-205ENST00000598209 ITGB1P05556 798 aa15.26■□□□□ 0.03
UPF1-205ENST00000598209 KRT18P05783 430 aaKnown RBP15.26■□□□□ 0.03
UPF1-205ENST00000598209 NOMO2Q5JPE7 1267 aa15.26■□□□□ 0.03
UPF1-205ENST00000598209 CCDC73Q6ZRK6 1079 aa15.26■□□□□ 0.03
UPF1-205ENST00000598209 KCNG4Q8TDN1 519 aa15.26■□□□□ 0.03
UPF1-205ENST00000598209 SPIRE2Q8WWL2 714 aa15.26■□□□□ 0.03
UPF1-205ENST00000598209 APOL6Q9BWW8 343 aa15.26■□□□□ 0.03
UPF1-205ENST00000598209 PANK2Q9BZ23 570 aa15.26■□□□□ 0.03
UPF1-205ENST00000598209 LMAN2LQ9H0V9 348 aa15.26■□□□□ 0.03
UPF1-205ENST00000598209 NXF3Q9H4D5 531 aaKnown RBP15.26■□□□□ 0.03
UPF1-205ENST00000598209 PDZD7Q9H5P4 517 aa15.26■□□□□ 0.03
UPF1-205ENST00000598209 TMEM134Q9H6X4 195 aa15.26■□□□□ 0.03
UPF1-205ENST00000598209 KCNG1Q9UIX4 513 aa15.26■□□□□ 0.03
UPF1-205ENST00000598209 PLAGL2Q9UPG8 496 aa15.26■□□□□ 0.03
UPF1-205ENST00000598209 RBM19Q9Y4C8 960 aaKnown RBP15.26■□□□□ 0.03
UPF1-205ENST00000598209 HES2Q9Y543 173 aa15.26■□□□□ 0.03
UPF1-205ENST00000598209 A0A087X0B3 334 aa15.25■□□□□ 0.03
UPF1-205ENST00000598209 FAM13AO94988 1023 aa15.25■□□□□ 0.03
UPF1-205ENST00000598209 STAT6P42226 847 aa15.25■□□□□ 0.03
UPF1-205ENST00000598209 SMTNP53814 917 aa15.25■□□□□ 0.03
UPF1-205ENST00000598209 GIT2Q14161 759 aa15.25■□□□□ 0.03
UPF1-205ENST00000598209 CSPP1Q1MSJ5 1256 aa15.25■□□□□ 0.03
UPF1-205ENST00000598209 NT5DC1Q5TFE4 455 aa15.25■□□□□ 0.03
UPF1-205ENST00000598209 EEF1DP3Q658K8 133 aa15.25■□□□□ 0.03
UPF1-205ENST00000598209 KCNT2Q6UVM3 1135 aa15.25■□□□□ 0.03
UPF1-205ENST00000598209 TAS1R3Q7RTX0 852 aa15.25■□□□□ 0.03
UPF1-205ENST00000598209 THNSL1Q8IYQ7 743 aa15.25■□□□□ 0.03
UPF1-205ENST00000598209 HACE1Q8IYU2 909 aa15.25■□□□□ 0.03
UPF1-205ENST00000598209 SPPL3Q8TCT6 385 aa15.25■□□□□ 0.03
UPF1-205ENST00000598209 URGCPQ8TCY9 931 aa15.25■□□□□ 0.03
UPF1-205ENST00000598209 ZNF558Q96NG5 402 aa15.25■□□□□ 0.03
UPF1-205ENST00000598209 ADPGKQ9BRR6 497 aa15.25■□□□□ 0.03
UPF1-205ENST00000598209 NTPCRQ9BSD7 190 aaKnown RBP15.25■□□□□ 0.03
UPF1-205ENST00000598209 RNF39Q9H2S5 420 aa15.25■□□□□ 0.03
UPF1-205ENST00000598209 UBN1Q9NPG3 1134 aa15.25■□□□□ 0.03
UPF1-205ENST00000598209 TBC1D13Q9NVG8 400 aa15.25■□□□□ 0.03
UPF1-205ENST00000598209 LARSQ9P2J5 1176 aaKnown RBP15.25■□□□□ 0.03
UPF1-205ENST00000598209 TBCAO75347 108 aaKnown RBP15.24■□□□□ 0.03
UPF1-205ENST00000598209 FGF18O76093 207 aa15.24■□□□□ 0.03
UPF1-205ENST00000598209 CSPG5O95196 566 aa15.24■□□□□ 0.03
UPF1-205ENST00000598209 PBX3P40426 434 aa15.24■□□□□ 0.03
UPF1-205ENST00000598209 ME1P48163 572 aa15.24■□□□□ 0.03
UPF1-205ENST00000598209 AFF1P51825 1210 aaKnown RBP15.24■□□□□ 0.03
UPF1-205ENST00000598209 ZNF131P52739 623 aa15.24■□□□□ 0.03
UPF1-205ENST00000598209 RNASELQ05823 741 aaKnown RBP15.24■□□□□ 0.03
UPF1-205ENST00000598209 SKIV2LQ15477 1246 aaKnown RBP15.24■□□□□ 0.03
UPF1-205ENST00000598209 TIGD5Q53EQ6 642 aa15.24■□□□□ 0.03
UPF1-205ENST00000598209 AXDND1Q5T1B0 1012 aaPredicted RBP15.24■□□□□ 0.03
UPF1-205ENST00000598209 ATF7IP2Q5U623 682 aa15.24■□□□□ 0.03
UPF1-205ENST00000598209 SHC4Q6S5L8 630 aa15.24■□□□□ 0.03
UPF1-205ENST00000598209 SV2BQ7L1I2 683 aa15.24■□□□□ 0.03
UPF1-205ENST00000598209 PDILTQ8N807 584 aa15.24■□□□□ 0.03
UPF1-205ENST00000598209 TMEM161BQ8NDZ6 487 aa15.24■□□□□ 0.03
UPF1-205ENST00000598209 GAD1Q99259 594 aa15.24■□□□□ 0.03
UPF1-205ENST00000598209 MRPL4Q9BYD3 311 aaKnown RBP15.24■□□□□ 0.03
UPF1-205ENST00000598209 ZHX3Q9H4I2 956 aa15.24■□□□□ 0.03
UPF1-205ENST00000598209 NRDE2Q9H7Z3 1164 aa15.24■□□□□ 0.03
UPF1-205ENST00000598209 PARVGQ9HBI0 331 aa15.24■□□□□ 0.03
UPF1-205ENST00000598209 PRDM6Q9NQX0 595 aa15.24■□□□□ 0.03
UPF1-205ENST00000598209 RCOR1Q9UKL0 485 aa15.24■□□□□ 0.03
UPF1-205ENST00000598209 PCDHA7Q9UN72 937 aa15.24■□□□□ 0.03
UPF1-205ENST00000598209 GIT1Q9Y2X7 761 aa15.24■□□□□ 0.03
UPF1-205ENST00000598209 CITO14578 2027 aa15.24■□□□□ 0.03
UPF1-205ENST00000598209 ARL5CA6NH57 179 aa15.23■□□□□ 0.03
UPF1-205ENST00000598209 ZC3H11AO75152 810 aaKnown RBP eCLIP15.23■□□□□ 0.03
UPF1-205ENST00000598209 POMCP01189 267 aa15.23■□□□□ 0.03
UPF1-205ENST00000598209 MAPTP10636 758 aaKnown RBP15.23■□□□□ 0.03
UPF1-205ENST00000598209 AKAP5P24588 427 aa15.23■□□□□ 0.03
UPF1-205ENST00000598209 DNAJB1P25685 340 aa15.23■□□□□ 0.03
UPF1-205ENST00000598209 PPM1AP35813 382 aa15.23■□□□□ 0.03
UPF1-205ENST00000598209 MLH1P40692 756 aa15.23■□□□□ 0.03
UPF1-205ENST00000598209 NCKAP1LP55160 1127 aa15.23■□□□□ 0.03
UPF1-205ENST00000598209 BCAR1P56945 870 aa15.23■□□□□ 0.03
UPF1-205ENST00000598209 STRN3Q13033 797 aa15.23■□□□□ 0.03
UPF1-205ENST00000598209 CAMK1Q14012 370 aa15.23■□□□□ 0.03
UPF1-205ENST00000598209 DCAF4L1Q3SXM0 396 aa15.23■□□□□ 0.03
UPF1-205ENST00000598209 MYCT1Q8N699 235 aa15.23■□□□□ 0.03
UPF1-205ENST00000598209 SLC17A8Q8NDX2 589 aa15.23■□□□□ 0.03
UPF1-205ENST00000598209 POF1BQ8WVV4 589 aa15.23■□□□□ 0.03
UPF1-205ENST00000598209 CHAMP1Q96JM3 812 aa15.23■□□□□ 0.03
UPF1-205ENST00000598209 ACO2Q99798 780 aaKnown RBP15.23■□□□□ 0.03
UPF1-205ENST00000598209 GBP3Q9H0R5 595 aa15.23■□□□□ 0.03
UPF1-205ENST00000598209 SPG21Q9NZD8 308 aa15.23■□□□□ 0.03
UPF1-205ENST00000598209 KANSL3Q9P2N6 904 aa15.23■□□□□ 0.03
UPF1-205ENST00000598209 PARP2Q9UGN5 583 aa15.23■□□□□ 0.03
UPF1-205ENST00000598209 TNFSF13BQ9Y275 285 aa15.23■□□□□ 0.03
UPF1-205ENST00000598209 PRUNE2Q8WUY3 3088 aa15.23■□□□□ 0.03
UPF1-205ENST00000598209 REV3LO60673 3130 aa15.22■□□□□ 0.03
UPF1-205ENST00000598209 MYMKA6NI61 221 aa15.22■□□□□ 0.03
UPF1-205ENST00000598209 H0YCG3 227 aa15.22■□□□□ 0.03
UPF1-205ENST00000598209 INPPL1O15357 1258 aa15.22■□□□□ 0.03
UPF1-205ENST00000598209 ALDH7A1P49419 539 aaKnown RBP15.22■□□□□ 0.03
UPF1-205ENST00000598209 KRT85P78386 507 aa15.22■□□□□ 0.03
UPF1-205ENST00000598209 PLCB3Q01970 1234 aa15.22■□□□□ 0.03
UPF1-205ENST00000598209 UBE3AQ05086 875 aa15.22■□□□□ 0.03
UPF1-205ENST00000598209 DYMQ7RTS9 669 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms