RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 PRPF4BQ13523 1007 aaKnown RBP12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 MCM6Q14566 821 aa12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 COL19A1Q14993 1142 aa12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 MAPK6Q16659 721 aa12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 TIGD5Q53EQ6 642 aa12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 NT5DC1Q5TFE4 455 aa12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 GLB1LQ6UWU2 654 aa12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 GPBP1Q86WP2 473 aa12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 TMEM173Q86WV6 379 aaPredicted RBP12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 ZNF280BQ86YH2 543 aa12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 PGBD4Q96DM1 585 aa12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 DRC1Q96MC2 740 aa12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 REEP2Q9BRK0 252 aa12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 TIPINQ9BVW5 301 aa12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 NSUN3Q9H649 340 aaKnown RBP12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 NRDE2Q9H7Z3 1164 aa12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 AAASQ9NRG9 546 aa12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 KCND2Q9NZV8 630 aa12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 DNAJB4Q9UDY4 337 aa12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 ZDHHC9Q9Y397 364 aa12.12□□□□□ -0.47
SHKBP1-206ENST00000595523 PHLPP2Q6ZVD8 1323 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 ARL5CA6NH57 179 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 CCDC169A6NNP5 214 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 NT5C1B-RDH14C9J2C7 533 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 SLC16A4O15374 487 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 DDHD2O94830 711 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 ITGA4P13612 1032 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 PDIA4P13667 645 aaKnown RBP12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 PLS3P13797 630 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 LIG1P18858 919 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 GTF2F1P35269 517 aaKnown RBP eCLIP12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 MLH1P40692 756 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 EFNA5P52803 228 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 BCAR1P56945 870 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 ERVFC1P60507 584 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 PLCB3Q01970 1234 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 NCBP1Q09161 790 aaKnown RBP12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 DMP1Q13316 513 aaPredicted RBP12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 DHX8Q14562 1220 aaKnown RBP12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 STK38Q15208 465 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 SKIV2LQ15477 1246 aaKnown RBP12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 CSPP1Q1MSJ5 1256 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 FOXD4L6Q3SYB3 417 aaPredicted RBP12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 FOXD4L3Q6VB84 417 aaPredicted RBP12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 ADGRD2Q7Z7M1 963 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 THNSL1Q8IYQ7 743 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 SLC39A11Q8N1S5 342 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 KRI1Q8N9T8 703 aaKnown RBP12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 CNNM3Q8NE01 707 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 GSTCDQ8NEC7 633 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 BCL7CQ8WUZ0 217 aaPredicted RBP12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 RSPH1Q8WYR4 309 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 LARP4BQ92615 738 aaKnown RBP12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 ZFP42Q96MM3 310 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 ZNF558Q96NG5 402 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 GAD1Q99259 594 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 NTPCRQ9BSD7 190 aaKnown RBP12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 APOL6Q9BWW8 343 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 CXCL16Q9H2A7 254 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 C17orf75Q9HAS0 396 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 MIOSQ9NXC5 875 aa12.11□□□□□ -0.47
SHKBP1-206ENST00000595523 PLXNA3P51805 1871 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 K7ERI5 159 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 ABLIM1O14639 778 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 FSCN2O14926 492 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 N4BP3O15049 544 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 SPTLC2O15270 562 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 ZC3H11AO75152 810 aaKnown RBP eCLIP12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 YEATS4O95619 227 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 POMCP01189 267 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 AKAP5P24588 427 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 PPM1AP35813 382 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 SLC11A1P49279 550 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 ZNF131P52739 623 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 UBE3AQ05086 875 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 HYAL1Q12794 435 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 GIT2Q14161 759 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 TMEM161BQ8NDZ6 487 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 RASSF8Q8NHQ8 419 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 SPIRE2Q8WWL2 714 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 ATXN2LQ8WWM7 1075 aaKnown RBP12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 MRPS27Q92552 414 aaKnown RBP12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 HLA-CQ95604 372 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 CHAMP1Q96JM3 812 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 ZNF396Q96N95 335 aaPredicted RBP12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 VN1R3Q9BXE9 311 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 TRIM6Q9C030 488 aaPredicted RBP12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 TMEM134Q9H6X4 195 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 PTPRHQ9HD43 1115 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 KMT5AQ9NQR1 393 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 TLR9Q9NR96 1032 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 ODF2LQ9ULJ1 636 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 LZTS1Q9Y250 596 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 TRIOO75962 3097 aa12.1□□□□□ -0.47
SHKBP1-206ENST00000595523 ZMYM2Q9UBW7 1377 aa12.09□□□□□ -0.47
SHKBP1-206ENST00000595523 PPP6R2O75170 966 aa12.09□□□□□ -0.47
SHKBP1-206ENST00000595523 BRD1O95696 1058 aa12.09□□□□□ -0.47
SHKBP1-206ENST00000595523 GALTP07902 379 aa12.09□□□□□ -0.47
SHKBP1-206ENST00000595523 MAPTP10636 758 aaKnown RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 170.6 ms