RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 LONRF3Q496Y0 759 aa19.58■□□□□ 0.72
SHKBP1-204ENST00000594862 CALML4Q96GE6 196 aa19.58■□□□□ 0.72
SHKBP1-204ENST00000594862 EIF2AQ9BY44 585 aaKnown RBP19.58■□□□□ 0.72
SHKBP1-204ENST00000594862 IGFLR1Q9H665 355 aa19.58■□□□□ 0.72
SHKBP1-204ENST00000594862 NRDE2Q9H7Z3 1164 aa19.58■□□□□ 0.72
SHKBP1-204ENST00000594862 MEIS3P2A8K0S8 358 aa19.57■□□□□ 0.72
SHKBP1-204ENST00000594862 B4GALT5O43286 388 aa19.57■□□□□ 0.72
SHKBP1-204ENST00000594862 NR1I2O75469 434 aa19.57■□□□□ 0.72
SHKBP1-204ENST00000594862 SYT1P21579 422 aa19.57■□□□□ 0.72
SHKBP1-204ENST00000594862 GUCY2CP25092 1073 aa19.57■□□□□ 0.72
SHKBP1-204ENST00000594862 NDUFV1P49821 464 aa19.57■□□□□ 0.72
SHKBP1-204ENST00000594862 ZRSR1Q15695 479 aaKnown RBP19.57■□□□□ 0.72
SHKBP1-204ENST00000594862 TMC7Q7Z402 723 aa19.57■□□□□ 0.72
SHKBP1-204ENST00000594862 CABP7Q86V35 215 aa19.57■□□□□ 0.72
SHKBP1-204ENST00000594862 HSCBQ8IWL3 235 aa19.57■□□□□ 0.72
SHKBP1-204ENST00000594862 BSNDQ8WZ55 320 aa19.57■□□□□ 0.72
SHKBP1-204ENST00000594862 IGSF21Q96ID5 467 aa19.57■□□□□ 0.72
SHKBP1-204ENST00000594862 CCDC113Q9H0I3 377 aa19.57■□□□□ 0.72
SHKBP1-204ENST00000594862 RAPGEFL1Q9UHV5 662 aa19.57■□□□□ 0.72
SHKBP1-204ENST00000594862 RBM19Q9Y4C8 960 aaKnown RBP19.57■□□□□ 0.72
SHKBP1-204ENST00000594862 GRXCR2A6NFK2 248 aa19.56■□□□□ 0.72
SHKBP1-204ENST00000594862 ARL5CA6NH57 179 aa19.56■□□□□ 0.72
SHKBP1-204ENST00000594862 H3BQ06 376 aaPredicted RBP19.56■□□□□ 0.72
SHKBP1-204ENST00000594862 NPTXRO95502 500 aa19.56■□□□□ 0.72
SHKBP1-204ENST00000594862 GALTP07902 379 aa19.56■□□□□ 0.72
SHKBP1-204ENST00000594862 CDC25AP30304 524 aa19.56■□□□□ 0.72
SHKBP1-204ENST00000594862 PBX3P40426 434 aa19.56■□□□□ 0.72
SHKBP1-204ENST00000594862 ERVFC1P60507 584 aa19.56■□□□□ 0.72
SHKBP1-204ENST00000594862 SF3A1Q15459 793 aaKnown RBP19.56■□□□□ 0.72
SHKBP1-204ENST00000594862 DUSP6Q16828 381 aa19.56■□□□□ 0.72
SHKBP1-204ENST00000594862 DCAF4L1Q3SXM0 396 aa19.56■□□□□ 0.72
SHKBP1-204ENST00000594862 PLPP4Q5VZY2 271 aa19.56■□□□□ 0.72
SHKBP1-204ENST00000594862 RINT1Q6NUQ1 792 aa19.56■□□□□ 0.72
SHKBP1-204ENST00000594862 ADGRD2Q7Z7M1 963 aa19.56■□□□□ 0.72
SHKBP1-204ENST00000594862 DDX53Q86TM3 631 aaKnown RBP19.56■□□□□ 0.72
SHKBP1-204ENST00000594862 SYT2Q8N9I0 419 aaPredicted RBP19.56■□□□□ 0.72
SHKBP1-204ENST00000594862 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.56■□□□□ 0.72
SHKBP1-204ENST00000594862 NXF3Q9H4D5 531 aaKnown RBP19.56■□□□□ 0.72
SHKBP1-204ENST00000594862 ZSCAN16Q9H4T2 348 aaPredicted RBP19.56■□□□□ 0.72
SHKBP1-204ENST00000594862 PRKAG3Q9UGI9 489 aa19.56■□□□□ 0.72
SHKBP1-204ENST00000594862 CD207Q9UJ71 328 aa19.56■□□□□ 0.72
SHKBP1-204ENST00000594862 HIP1RO75146 1068 aa19.55■□□□□ 0.72
SHKBP1-204ENST00000594862 ALDH2P05091 517 aa19.55■□□□□ 0.72
SHKBP1-204ENST00000594862 SCP2P22307 547 aa19.55■□□□□ 0.72
SHKBP1-204ENST00000594862 LTBRP36941 435 aa19.55■□□□□ 0.72
SHKBP1-204ENST00000594862 MLH1P40692 756 aa19.55■□□□□ 0.72
SHKBP1-204ENST00000594862 SMAD4Q13485 552 aaKnown RBP19.55■□□□□ 0.72
SHKBP1-204ENST00000594862 TMEM119Q4V9L6 283 aa19.55■□□□□ 0.72
SHKBP1-204ENST00000594862 C1orf186Q6ZWK4 172 aa19.55■□□□□ 0.72
SHKBP1-204ENST00000594862 RASSF8Q8NHQ8 419 aa19.55■□□□□ 0.72
SHKBP1-204ENST00000594862 NECAB3Q96P71 396 aaPredicted RBP19.55■□□□□ 0.72
SHKBP1-204ENST00000594862 RPS6KC1Q96S38 1066 aa19.55■□□□□ 0.72
SHKBP1-204ENST00000594862 GBP3Q9H0R5 595 aa19.55■□□□□ 0.72
SHKBP1-204ENST00000594862 PDZD7Q9H5P4 517 aa19.55■□□□□ 0.72
SHKBP1-204ENST00000594862 CCDC169A6NNP5 214 aa19.54■□□□□ 0.72
SHKBP1-204ENST00000594862 H0YCG3 227 aa19.54■□□□□ 0.72
SHKBP1-204ENST00000594862 K7ERI5 159 aa19.54■□□□□ 0.72
SHKBP1-204ENST00000594862 TBX10O75333 385 aa19.54■□□□□ 0.72
SHKBP1-204ENST00000594862 POMCP01189 267 aa19.54■□□□□ 0.72
SHKBP1-204ENST00000594862 SSBP05455 408 aaKnown RBP eCLIP19.54■□□□□ 0.72
SHKBP1-204ENST00000594862 SLC11A1P49279 550 aa19.54■□□□□ 0.72
SHKBP1-204ENST00000594862 PEX3P56589 373 aa19.54■□□□□ 0.72
SHKBP1-204ENST00000594862 GRIK3Q13003 919 aa19.54■□□□□ 0.72
SHKBP1-204ENST00000594862 RESTQ13127 1097 aa19.54■□□□□ 0.72
SHKBP1-204ENST00000594862 RBM23Q86U06 439 aaKnown RBP19.54■□□□□ 0.72
SHKBP1-204ENST00000594862 MRPL43Q8N983 215 aaKnown RBP19.54■□□□□ 0.72
SHKBP1-204ENST00000594862 TMEM87AQ8NBN3 555 aa19.54■□□□□ 0.72
SHKBP1-204ENST00000594862 PNMA5Q96PV4 448 aa19.54■□□□□ 0.72
SHKBP1-204ENST00000594862 GAD1Q99259 594 aa19.54■□□□□ 0.72
SHKBP1-204ENST00000594862 POP1Q99575 1024 aaKnown RBP19.54■□□□□ 0.72
SHKBP1-204ENST00000594862 RUSC1Q9BVN2 902 aa19.54■□□□□ 0.72
SHKBP1-204ENST00000594862 APOL6Q9BWW8 343 aa19.54■□□□□ 0.72
SHKBP1-204ENST00000594862 TMEM134Q9H6X4 195 aa19.54■□□□□ 0.72
SHKBP1-204ENST00000594862 KMT5AQ9NQR1 393 aa19.54■□□□□ 0.72
SHKBP1-204ENST00000594862 FAN1Q9Y2M0 1017 aa19.54■□□□□ 0.72
SHKBP1-204ENST00000594862 IRAK3Q9Y616 596 aa19.54■□□□□ 0.72
SHKBP1-204ENST00000594862 MORC2Q9Y6X9 1032 aaPredicted RBP19.54■□□□□ 0.72
SHKBP1-204ENST00000594862 MYO7AQ13402 2215 aa19.53■□□□□ 0.72
SHKBP1-204ENST00000594862 TDRD15B5MCY1 1934 aaKnown RBP19.53■□□□□ 0.72
SHKBP1-204ENST00000594862 NT5C1B-RDH14C9J2C7 533 aa19.53■□□□□ 0.72
SHKBP1-204ENST00000594862 STX6O43752 255 aa19.53■□□□□ 0.72
SHKBP1-204ENST00000594862 HSP90AA1P07900 732 aaKnown RBP19.53■□□□□ 0.72
SHKBP1-204ENST00000594862 PLA2G4BP0C869 781 aa19.53■□□□□ 0.72
SHKBP1-204ENST00000594862 LIG1P18858 919 aa19.53■□□□□ 0.72
SHKBP1-204ENST00000594862 GTF2F1P35269 517 aaKnown RBP eCLIP19.53■□□□□ 0.721e-6■■■■■ 54.6
SHKBP1-204ENST00000594862 NPTX2P47972 431 aa19.53■□□□□ 0.72
SHKBP1-204ENST00000594862 SMTNP53814 917 aa19.53■□□□□ 0.72
SHKBP1-204ENST00000594862 COASYQ13057 564 aa19.53■□□□□ 0.72
SHKBP1-204ENST00000594862 TMEM184AQ6ZMB5 413 aa19.53■□□□□ 0.72
SHKBP1-204ENST00000594862 KCNK18Q7Z418 384 aa19.53■□□□□ 0.72
SHKBP1-204ENST00000594862 ZNF280BQ86YH2 543 aa19.53■□□□□ 0.72
SHKBP1-204ENST00000594862 VPS52Q8N1B4 723 aa19.53■□□□□ 0.72
SHKBP1-204ENST00000594862 SPIRE2Q8WWL2 714 aa19.53■□□□□ 0.72
SHKBP1-204ENST00000594862 MRPL4Q9BYD3 311 aaKnown RBP19.53■□□□□ 0.72
SHKBP1-204ENST00000594862 ZBP1Q9H171 429 aa19.53■□□□□ 0.72
SHKBP1-204ENST00000594862 LARSQ9P2J5 1176 aaKnown RBP19.53■□□□□ 0.72
SHKBP1-204ENST00000594862 ARHGAP28Q9P2N2 729 aa19.53■□□□□ 0.72
SHKBP1-204ENST00000594862 DNAJB4Q9UDY4 337 aa19.53■□□□□ 0.72
SHKBP1-204ENST00000594862 PARP2Q9UGN5 583 aa19.53■□□□□ 0.72
SHKBP1-204ENST00000594862 ODF2LQ9ULJ1 636 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms