RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 SHROOM1Q2M3G4 852 aaPredicted RBP11.69□□□□□ -0.54
VPS4B-206ENST00000591475 RINT1Q6NUQ1 792 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 ADAT2Q7Z6V5 191 aaKnown RBP11.69□□□□□ -0.54
VPS4B-206ENST00000591475 JAMLQ86YT9 394 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 MYCT1Q8N699 235 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 ANKS4BQ8N8V4 417 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 ARHGEF26Q96DR7 871 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 P2RX7Q99572 595 aaKnown RBP11.69□□□□□ -0.54
VPS4B-206ENST00000591475 SELENOSQ9BQE4 189 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 INTS2Q9H0H0 1204 aaKnown RBP11.69□□□□□ -0.54
VPS4B-206ENST00000591475 EPB41L4BQ9H329 900 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 ERVK-5Q9HDB9 667 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 SEPT11Q9NVA2 429 aaKnown RBP11.69□□□□□ -0.54
VPS4B-206ENST00000591475 SCN4AP35499 1836 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 CCT8L1PA6NM43 557 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 SFI1A8K8P3 1242 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 MIF4GDA9UHW6 222 aaKnown RBP11.69□□□□□ -0.54
VPS4B-206ENST00000591475 KIAA0391O15091 583 aaKnown RBP11.69□□□□□ -0.54
VPS4B-206ENST00000591475 ASAP2O43150 1006 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 PHF2O75151 1096 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 MMEP08473 750 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 KRT13P13646 458 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 CIITAP33076 1130 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 COPB2P35606 906 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 MMP13P45452 471 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 HADHBP55084 474 aaKnown RBP11.69□□□□□ -0.54
VPS4B-206ENST00000591475 ZNF211Q13398 564 aaPredicted RBP11.69□□□□□ -0.54
VPS4B-206ENST00000591475 PPP2R5AQ15172 486 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 EAPPQ56P03 285 aaPredicted RBP11.69□□□□□ -0.54
VPS4B-206ENST00000591475 PRAMEF18Q5VWM3 479 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 STXBP4Q6ZWJ1 553 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 FBXO11Q86XK2 927 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 SIAH1Q8IUQ4 282 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 RHOT2Q8IXI1 618 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 UBL4BQ8N7F7 174 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 GIMAP7Q8NHV1 300 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 MAGEC3Q8TD91 643 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 GLG1Q92896 1179 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 GPR88Q9GZN0 384 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 THAP2Q9H0W7 228 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 BCAS3Q9H6U6 928 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 ARHGEF10LQ9HCE6 1279 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 APEX2Q9UBZ4 518 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 PARP2Q9UGN5 583 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 FRMD4BQ9Y2L6 1034 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 SNX24Q9Y343 169 aa11.69□□□□□ -0.54
VPS4B-206ENST00000591475 LOXHD1Q8IVV2 1947 aa11.68□□□□□ -0.54
VPS4B-206ENST00000591475 PODXLO00592 558 aa11.68□□□□□ -0.54
VPS4B-206ENST00000591475 RGS16O15492 202 aaPredicted RBP11.68□□□□□ -0.54
VPS4B-206ENST00000591475 ATP2C2O75185 946 aa11.68□□□□□ -0.54
VPS4B-206ENST00000591475 AGTP01019 485 aa11.68□□□□□ -0.54
VPS4B-206ENST00000591475 VCAM1P19320 739 aa11.68□□□□□ -0.54
VPS4B-206ENST00000591475 NMT1P30419 496 aaKnown RBP11.68□□□□□ -0.54
VPS4B-206ENST00000591475 CHRNA3P32297 505 aa11.68□□□□□ -0.54
VPS4B-206ENST00000591475 ZNF76P36508 570 aa11.68□□□□□ -0.54
VPS4B-206ENST00000591475 MYL7Q01449 175 aa11.68□□□□□ -0.54
VPS4B-206ENST00000591475 ADCY2Q08462 1091 aa11.68□□□□□ -0.54
VPS4B-206ENST00000591475 ITIH4Q14624 930 aa11.68□□□□□ -0.54
VPS4B-206ENST00000591475 KIF22Q14807 665 aa11.68□□□□□ -0.54
VPS4B-206ENST00000591475 C6orf118Q5T5N4 469 aa11.68□□□□□ -0.54
VPS4B-206ENST00000591475 WLSQ5T9L3 541 aa11.68□□□□□ -0.54
VPS4B-206ENST00000591475 ZDHHC24Q6UX98 284 aa11.68□□□□□ -0.54
VPS4B-206ENST00000591475 HS2ST1Q7LGA3 356 aa11.68□□□□□ -0.54
VPS4B-206ENST00000591475 RNF25Q96BH1 459 aaPredicted RBP11.68□□□□□ -0.54
VPS4B-206ENST00000591475 ZNF317Q96PQ6 595 aaPredicted RBP11.68□□□□□ -0.54
VPS4B-206ENST00000591475 STMN4Q9H169 189 aaPredicted RBP11.68□□□□□ -0.54
VPS4B-206ENST00000591475 AZI2Q9H6S1 392 aa11.68□□□□□ -0.54
VPS4B-206ENST00000591475 TUFT1Q9NNX1 390 aa11.68□□□□□ -0.54
VPS4B-206ENST00000591475 MTRF1LQ9UGC7 380 aaKnown RBP11.68□□□□□ -0.54
VPS4B-206ENST00000591475 ZNF112Q9UJU3 913 aa11.68□□□□□ -0.54
VPS4B-206ENST00000591475 WDR90Q96KV7 1748 aa11.68□□□□□ -0.54
VPS4B-206ENST00000591475 PFASO15067 1338 aa11.68□□□□□ -0.54
VPS4B-206ENST00000591475 TLDC2A0PJX2 215 aa11.67□□□□□ -0.54
VPS4B-206ENST00000591475 GGPS1O95749 300 aa11.67□□□□□ -0.54
VPS4B-206ENST00000591475 RFX1P22670 979 aa11.67□□□□□ -0.54
VPS4B-206ENST00000591475 PTGIRP43119 386 aa11.67□□□□□ -0.54
VPS4B-206ENST00000591475 ARHGAP44Q17R89 818 aa11.67□□□□□ -0.54
VPS4B-206ENST00000591475 USH1GQ495M9 461 aa11.67□□□□□ -0.54
VPS4B-206ENST00000591475 CBWD6Q4V339 395 aa11.67□□□□□ -0.54
VPS4B-206ENST00000591475 ZC2HC1CQ53FD0 456 aaPredicted RBP11.67□□□□□ -0.54
VPS4B-206ENST00000591475 CBWD3Q5JTY5 395 aa11.67□□□□□ -0.54
VPS4B-206ENST00000591475 CBWD5Q5RIA9 395 aa11.67□□□□□ -0.54
VPS4B-206ENST00000591475 C11orf63Q6NUN7 778 aa11.67□□□□□ -0.54
VPS4B-206ENST00000591475 GMCL1P1Q8NEA9 526 aa11.67□□□□□ -0.54
VPS4B-206ENST00000591475 FBXO25Q8TCJ0 367 aa11.67□□□□□ -0.54
VPS4B-206ENST00000591475 ATXN2LQ8WWM7 1075 aaKnown RBP11.67□□□□□ -0.54
VPS4B-206ENST00000591475 AGPAT1Q99943 283 aa11.67□□□□□ -0.54
VPS4B-206ENST00000591475 PARVGQ9HBI0 331 aa11.67□□□□□ -0.54
VPS4B-206ENST00000591475 RGL1Q9NZL6 768 aa11.67□□□□□ -0.54
VPS4B-206ENST00000591475 SEL1LQ9UBV2 794 aa11.67□□□□□ -0.54
VPS4B-206ENST00000591475 MCM8Q9UJA3 840 aa11.67□□□□□ -0.54
VPS4B-206ENST00000591475 TPX2Q9ULW0 747 aaKnown RBP11.67□□□□□ -0.54
VPS4B-206ENST00000591475 COG5Q9UP83 839 aa11.67□□□□□ -0.54
VPS4B-206ENST00000591475 TMX2Q9Y320 296 aa11.67□□□□□ -0.54
VPS4B-206ENST00000591475 RBBP6Q7Z6E9 1792 aaKnown RBP11.67□□□□□ -0.54
VPS4B-206ENST00000591475 F5H6K3 240 aa11.67□□□□□ -0.54
VPS4B-206ENST00000591475 EML1O00423 815 aa11.67□□□□□ -0.54
VPS4B-206ENST00000591475 GSTA1P08263 222 aa11.67□□□□□ -0.54
VPS4B-206ENST00000591475 CYP3A4P08684 503 aa11.67□□□□□ -0.54
VPS4B-206ENST00000591475 CYP2J2P51589 502 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms