RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 CNNM3Q8NE01 707 aa16.77■□□□□ 0.28
CLIP3-202ENST00000585466 SNX21Q969T3 373 aa16.77■□□□□ 0.28
CLIP3-202ENST00000585466 IGSF21Q96ID5 467 aa16.77■□□□□ 0.28
CLIP3-202ENST00000585466 ZFP42Q96MM3 310 aa16.77■□□□□ 0.28
CLIP3-202ENST00000585466 PDZD7Q9H5P4 517 aa16.77■□□□□ 0.28
CLIP3-202ENST00000585466 IGFLR1Q9H665 355 aa16.77■□□□□ 0.28
CLIP3-202ENST00000585466 PRMT7Q9NVM4 692 aaPredicted RBP16.77■□□□□ 0.28
CLIP3-202ENST00000585466 DNM3Q9UQ16 869 aa16.77■□□□□ 0.28
CLIP3-202ENST00000585466 MTMR6Q9Y217 621 aa16.77■□□□□ 0.28
CLIP3-202ENST00000585466 VPS37CA5D8V6 355 aaPredicted RBP16.76■□□□□ 0.27
CLIP3-202ENST00000585466 ARL5CA6NH57 179 aa16.76■□□□□ 0.27
CLIP3-202ENST00000585466 PER2O15055 1255 aa16.76■□□□□ 0.27
CLIP3-202ENST00000585466 NPTXRO95502 500 aa16.76■□□□□ 0.27
CLIP3-202ENST00000585466 EFEMP2O95967 443 aa16.76■□□□□ 0.27
CLIP3-202ENST00000585466 ITGA4P13612 1032 aa16.76■□□□□ 0.27
CLIP3-202ENST00000585466 SLC12A3P55017 1021 aa16.76■□□□□ 0.27
CLIP3-202ENST00000585466 SF3A1Q15459 793 aaKnown RBP16.76■□□□□ 0.27
CLIP3-202ENST00000585466 PLPP4Q5VZY2 271 aa16.76■□□□□ 0.27
CLIP3-202ENST00000585466 EEF1DP3Q658K8 133 aa16.76■□□□□ 0.27
CLIP3-202ENST00000585466 PDE12Q6L8Q7 609 aaKnown RBP16.76■□□□□ 0.27
CLIP3-202ENST00000585466 TAS1R3Q7RTX0 852 aa16.76■□□□□ 0.27
CLIP3-202ENST00000585466 FAM178BQ8IXR5 827 aa16.76■□□□□ 0.27
CLIP3-202ENST00000585466 KIFAP3Q92845 792 aa16.76■□□□□ 0.27
CLIP3-202ENST00000585466 GAD1Q99259 594 aa16.76■□□□□ 0.27
CLIP3-202ENST00000585466 TCF25Q9BQ70 676 aa16.76■□□□□ 0.27
CLIP3-202ENST00000585466 ZBP1Q9H171 429 aa16.76■□□□□ 0.27
CLIP3-202ENST00000585466 C2orf40Q9H1Z8 148 aa16.76■□□□□ 0.27
CLIP3-202ENST00000585466 MARCH5Q9NX47 278 aa16.76■□□□□ 0.27
CLIP3-202ENST00000585466 TRIP11Q15643 1979 aa16.76■□□□□ 0.27
CLIP3-202ENST00000585466 ZMYM2Q9UBW7 1377 aa16.76■□□□□ 0.27
CLIP3-202ENST00000585466 C2orf71A6NGG8 1288 aa16.75■□□□□ 0.27
CLIP3-202ENST00000585466 ACKR2O00590 384 aa16.75■□□□□ 0.27
CLIP3-202ENST00000585466 HIP1RO75146 1068 aa16.75■□□□□ 0.27
CLIP3-202ENST00000585466 POMCP01189 267 aa16.75■□□□□ 0.27
CLIP3-202ENST00000585466 PRKCBP05771 671 aa16.75■□□□□ 0.27
CLIP3-202ENST00000585466 PDCP20941 246 aa16.75■□□□□ 0.27
CLIP3-202ENST00000585466 MLH1P40692 756 aa16.75■□□□□ 0.27
CLIP3-202ENST00000585466 ALDH7A1P49419 539 aaKnown RBP16.75■□□□□ 0.27
CLIP3-202ENST00000585466 PPP2R5AQ15172 486 aa16.75■□□□□ 0.27
CLIP3-202ENST00000585466 NT5DC1Q5TFE4 455 aa16.75■□□□□ 0.27
CLIP3-202ENST00000585466 FAM173BQ6P4H8 233 aa16.75■□□□□ 0.27
CLIP3-202ENST00000585466 ZBTB8OSQ8IWT0 167 aa16.75■□□□□ 0.27
CLIP3-202ENST00000585466 COLGALT2Q8IYK4 626 aa16.75■□□□□ 0.27
CLIP3-202ENST00000585466 KHSRPQ92945 711 aaKnown RBP eCLIP16.75■□□□□ 0.27
CLIP3-202ENST00000585466 AK8Q96MA6 479 aa16.75■□□□□ 0.27
CLIP3-202ENST00000585466 GBP3Q9H0R5 595 aa16.75■□□□□ 0.27
CLIP3-202ENST00000585466 CXCL16Q9H2A7 254 aa16.75■□□□□ 0.27
CLIP3-202ENST00000585466 TLE6Q9H808 572 aa16.75■□□□□ 0.27
CLIP3-202ENST00000585466 NGRNQ9NPE2 291 aaKnown RBP16.75■□□□□ 0.27
CLIP3-202ENST00000585466 ARHGAP28Q9P2N2 729 aa16.75■□□□□ 0.27
CLIP3-202ENST00000585466 BARX2Q9UMQ3 279 aaPredicted RBP16.75■□□□□ 0.27
CLIP3-202ENST00000585466 CLIC4Q9Y696 253 aa16.75■□□□□ 0.27
CLIP3-202ENST00000585466 MBTPS2O43462 519 aa16.74■□□□□ 0.27
CLIP3-202ENST00000585466 AKAP5P24588 427 aa16.74■□□□□ 0.27
CLIP3-202ENST00000585466 GUCY2CP25092 1073 aa16.74■□□□□ 0.27
CLIP3-202ENST00000585466 NPTX2P47972 431 aa16.74■□□□□ 0.27
CLIP3-202ENST00000585466 SCNN1GP51170 649 aa16.74■□□□□ 0.27
CLIP3-202ENST00000585466 KRT17Q04695 432 aa16.74■□□□□ 0.27
CLIP3-202ENST00000585466 COASYQ13057 564 aa16.74■□□□□ 0.27
CLIP3-202ENST00000585466 SMAD2Q15796 467 aaKnown RBP16.74■□□□□ 0.27
CLIP3-202ENST00000585466 CLUL1Q15846 466 aa16.74■□□□□ 0.27
CLIP3-202ENST00000585466 MAPK6Q16659 721 aa16.74■□□□□ 0.27
CLIP3-202ENST00000585466 PUS10Q3MIT2 529 aaKnown RBP16.74■□□□□ 0.27
CLIP3-202ENST00000585466 ARSHQ5FYA8 562 aa16.74■□□□□ 0.27
CLIP3-202ENST00000585466 TMEM184AQ6ZMB5 413 aa16.74■□□□□ 0.27
CLIP3-202ENST00000585466 DDX53Q86TM3 631 aaKnown RBP16.74■□□□□ 0.27
CLIP3-202ENST00000585466 RNF168Q8IYW5 571 aaPredicted RBP16.74■□□□□ 0.27
CLIP3-202ENST00000585466 KCTD17Q8N5Z5 321 aa16.74■□□□□ 0.27
CLIP3-202ENST00000585466 MRPL43Q8N983 215 aaKnown RBP16.74■□□□□ 0.27
CLIP3-202ENST00000585466 SYT2Q8N9I0 419 aaPredicted RBP16.74■□□□□ 0.27
CLIP3-202ENST00000585466 SMRP1Q8NCR6 262 aa16.74■□□□□ 0.27
CLIP3-202ENST00000585466 DEPTORQ8TB45 409 aa16.74■□□□□ 0.27
CLIP3-202ENST00000585466 URGCPQ8TCY9 931 aa16.74■□□□□ 0.27
CLIP3-202ENST00000585466 PPP2R3CQ969Q6 453 aa16.74■□□□□ 0.27
CLIP3-202ENST00000585466 PLIN2Q99541 437 aa16.74■□□□□ 0.27
CLIP3-202ENST00000585466 CDCA3Q99618 268 aaPredicted RBP16.74■□□□□ 0.27
CLIP3-202ENST00000585466 TMEM175Q9BSA9 504 aa16.74■□□□□ 0.27
CLIP3-202ENST00000585466 UBN1Q9NPG3 1134 aa16.74■□□□□ 0.27
CLIP3-202ENST00000585466 FOXD4L1Q9NU39 408 aa16.74■□□□□ 0.27
CLIP3-202ENST00000585466 BLOC1S4Q9NUP1 217 aa16.74■□□□□ 0.27
CLIP3-202ENST00000585466 PUF60Q9UHX1 559 aaKnown RBP16.74■□□□□ 0.27
CLIP3-202ENST00000585466 GIT1Q9Y2X7 761 aa16.74■□□□□ 0.27
CLIP3-202ENST00000585466 F8W810 466 aa16.73■□□□□ 0.27
CLIP3-202ENST00000585466 ABLIM1O14639 778 aa16.73■□□□□ 0.27
CLIP3-202ENST00000585466 NRP1O14786 923 aa16.73■□□□□ 0.27
CLIP3-202ENST00000585466 SLC26A4O43511 780 aa16.73■□□□□ 0.27
CLIP3-202ENST00000585466 BMP15O95972 392 aa16.73■□□□□ 0.27
CLIP3-202ENST00000585466 RNASELQ05823 741 aaKnown RBP16.73■□□□□ 0.27
CLIP3-202ENST00000585466 SMAD4Q13485 552 aaKnown RBP16.73■□□□□ 0.27
CLIP3-202ENST00000585466 PRPF4BQ13523 1007 aaKnown RBP16.73■□□□□ 0.27
CLIP3-202ENST00000585466 EP400NLQ6ZTU2 488 aa16.73■□□□□ 0.27
CLIP3-202ENST00000585466 CABP7Q86V35 215 aa16.73■□□□□ 0.27
CLIP3-202ENST00000585466 MICAL1Q8TDZ2 1067 aa16.73■□□□□ 0.27
CLIP3-202ENST00000585466 AUTS2Q8WXX7 1259 aa16.73■□□□□ 0.27
CLIP3-202ENST00000585466 TMEM169Q96HH4 297 aa16.73■□□□□ 0.27
CLIP3-202ENST00000585466 APOL6Q9BWW8 343 aa16.73■□□□□ 0.27
CLIP3-202ENST00000585466 NT5C3AQ9H0P0 336 aa16.73■□□□□ 0.27
CLIP3-202ENST00000585466 PTPRHQ9HD43 1115 aa16.73■□□□□ 0.27
CLIP3-202ENST00000585466 ENTPD7Q9NQZ7 604 aa16.73■□□□□ 0.27
CLIP3-202ENST00000585466 KANSL3Q9P2N6 904 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms