RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 KATNA1O75449 491 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 C6orf222P0C671 652 aaPredicted RBP2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 MYBL2P10244 700 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 IL13P35225 146 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 MAP2K2P36507 400 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 BUD31P41223 144 aaPredicted RBP2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 LIMS1P48059 325 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 MMP14P50281 582 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 EPHB4P54760 987 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 RHBDL3P58872 404 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 RAC3P60763 192 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 EXOSC10Q01780 885 aaKnown RBP2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 TAP1Q03518 808 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 FAPQ12884 760 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 TTF1Q15361 905 aaPredicted RBP2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 PKN2Q16513 984 aaKnown RBP2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 ARHGAP29Q52LW3 1261 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 MIB1Q86YT6 1006 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 IGDCC3Q8IVU1 814 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 SCUBE1Q8IWY4 988 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 AMOTL1Q8IY63 956 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 TMEFF1Q8IYR6 380 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 RTKN2Q8IZC4 609 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 LINC00482Q8N8I6 264 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 NGDNQ8NEJ9 315 aaKnown RBP2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 DDX1Q92499 740 aaKnown RBP2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 COG3Q96JB2 828 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 TEX13AQ9BXU3 409 aaPredicted RBP2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 MKS1Q9NXB0 559 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 HSPBP1Q9NZL4 362 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 ZNF180Q9UJW8 692 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 U3KQE9 123 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 FLT4P35916 1363 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 TMEM82A0PJX8 343 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 GOLGA8BA8MQT2 603 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 CREB3O43889 395 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 ITGAVP06756 1048 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 HSP90AA1P07900 732 aaKnown RBP2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 GLI4P10075 376 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 TACR1P25103 407 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 EPHB3P54753 998 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 GUCY1A3Q02108 690 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 WDR72Q3MJ13 1102 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 BRDTQ58F21 947 aaPredicted RBP2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 TTLL5Q6EMB2 1281 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 MFSD5Q6N075 450 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 PPIL6Q8IXY8 311 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 GFM2Q969S9 779 aaKnown RBP2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 TNIP3Q96KP6 325 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 PRRX2Q99811 253 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 XYLT2Q9H1B5 865 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 NKX2-4Q9H2Z4 354 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 GPR27Q9NS67 375 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 KCNG1Q9UIX4 513 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 EMC9Q9Y3B6 208 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 RWDD3Q9Y3V2 267 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 LTBP3Q9NS15 1303 aa2.33□□□□□ -2.04
SMCHD1-211ENST00000584897 STXBP3O00186 592 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 SUV39H1O43463 412 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 BRINP1O60477 761 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 FOSP01100 380 aaPredicted RBP2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 TACR2P21452 398 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 TBX4P57082 545 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 BLOC1S1P78537 153 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 ZXDAP98168 799 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 SCRN1Q12765 414 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 SLC10A6Q3KNW5 377 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 FAM209AQ5JX71 171 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 GTF2IRD2BQ6EKJ0 949 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 USP53Q70EK8 1073 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 GTF2IRD2Q86UP8 949 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 GSPT2Q8IYD1 628 aaKnown RBP2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 TXNDC5Q8NBS9 432 aaKnown RBP2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 FAM122AQ96E09 287 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 WNK4Q96J92 1243 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 GPR101Q96P66 508 aaPredicted RBP2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 PRAM1Q96QH2 718 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 CDK19Q9BWU1 502 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 KRTAP9-9Q9BYP9 154 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 KRTAP9-4Q9BYQ2 154 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 CHMP4BQ9H444 224 aaKnown RBP2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 IP6K2Q9UHH9 426 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 ZDHHC9Q9Y397 364 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 X6R8D5 127 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 RNF123Q5XPI4 1314 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 COL2A1P02458 1487 aaPredicted RBP2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 KRT37O76014 449 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 JMJD7P0C870 316 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 SPATA31D3P0C874 917 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 VEGFAP15692 232 aaPredicted RBP2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 GPR85P60893 370 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 MLC1Q15049 377 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 CRY1Q16526 586 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 PTPN21Q16825 1174 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 GFOD2Q3B7J2 385 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 NRN1LQ496H8 165 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 SPATA31D4Q6ZUB0 917 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 LRRTM3Q86VH5 581 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 CILP2Q8IUL8 1156 aa2.32□□□□□ -2.04
SMCHD1-211ENST00000584897 RAVER1Q8IY67 606 aaKnown RBP2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms