RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 ZFPL1O95159 310 aa5.01□□□□□ -1.61
SMCHD1-209ENST00000583441 USP14P54578 494 aa5.01□□□□□ -1.61
SMCHD1-209ENST00000583441 ELLP55199 621 aaPredicted RBP5.01□□□□□ -1.61
SMCHD1-209ENST00000583441 ADCY1Q08828 1119 aa5.01□□□□□ -1.61
SMCHD1-209ENST00000583441 LRRC32Q14392 662 aa5.01□□□□□ -1.61
SMCHD1-209ENST00000583441 EPHA7Q15375 998 aa5.01□□□□□ -1.61
SMCHD1-209ENST00000583441 TERF2Q15554 542 aa5.01□□□□□ -1.61
SMCHD1-209ENST00000583441 BTBD8Q5XKL5 378 aa5.01□□□□□ -1.61
SMCHD1-209ENST00000583441 ZNF610Q8N9Z0 462 aa5.01□□□□□ -1.61
SMCHD1-209ENST00000583441 E2F7Q96AV8 911 aa5.01□□□□□ -1.61
SMCHD1-209ENST00000583441 RIC8BQ9NVN3 520 aa5.01□□□□□ -1.61
SMCHD1-209ENST00000583441 KCNK3O14649 394 aa5□□□□□ -1.61
SMCHD1-209ENST00000583441 FOXP2O15409 715 aa5□□□□□ -1.61
SMCHD1-209ENST00000583441 TGM5O43548 720 aa5□□□□□ -1.61
SMCHD1-209ENST00000583441 PRKD3O94806 890 aa5□□□□□ -1.61
SMCHD1-209ENST00000583441 SLC9A1P19634 815 aa5□□□□□ -1.61
SMCHD1-209ENST00000583441 NEK2P51955 445 aa5□□□□□ -1.61
SMCHD1-209ENST00000583441 SMAD3P84022 425 aaKnown RBP5□□□□□ -1.61
SMCHD1-209ENST00000583441 TTF1Q15361 905 aaPredicted RBP5□□□□□ -1.61
SMCHD1-209ENST00000583441 ERCC6LQ2NKX8 1250 aa5□□□□□ -1.61
SMCHD1-209ENST00000583441 CCDC181Q5TID7 509 aa5□□□□□ -1.61
SMCHD1-209ENST00000583441 TRIM68Q6AZZ1 485 aa5□□□□□ -1.61
SMCHD1-209ENST00000583441 CXXC5Q7LFL8 322 aaKnown RBP5□□□□□ -1.61
SMCHD1-209ENST00000583441 OTOP2Q7RTS6 562 aa5□□□□□ -1.61
SMCHD1-209ENST00000583441 RASSF3Q86WH2 238 aa5□□□□□ -1.61
SMCHD1-209ENST00000583441 COG1Q8WTW3 980 aa5□□□□□ -1.61
SMCHD1-209ENST00000583441 CHMP4CQ96CF2 233 aa5□□□□□ -1.61
SMCHD1-209ENST00000583441 AHCYL2Q96HN2 611 aaKnown RBP5□□□□□ -1.61
SMCHD1-209ENST00000583441 ELF4Q99607 663 aaPredicted RBP5□□□□□ -1.61
SMCHD1-209ENST00000583441 H2AFY2Q9P0M6 372 aaPredicted RBP5□□□□□ -1.61
SMCHD1-209ENST00000583441 TRHDEQ9UKU6 1024 aa5□□□□□ -1.61
SMCHD1-209ENST00000583441 TELO2Q9Y4R8 837 aa5□□□□□ -1.61
SMCHD1-209ENST00000583441 HS3ST4Q9Y661 456 aa5□□□□□ -1.61
SMCHD1-209ENST00000583441 PRAMEF25A6NGN4 478 aa4.99□□□□□ -1.61
SMCHD1-209ENST00000583441 DNAJC9-AS1A6NH13 148 aa4.99□□□□□ -1.61
SMCHD1-209ENST00000583441 MARCH6O60337 910 aa4.99□□□□□ -1.61
SMCHD1-209ENST00000583441 C4BPAP04003 597 aaKnown RBP4.99□□□□□ -1.61
SMCHD1-209ENST00000583441 KRT85P78386 507 aa4.99□□□□□ -1.61
SMCHD1-209ENST00000583441 TMEM132BQ14DG7 1078 aa4.99□□□□□ -1.61
SMCHD1-209ENST00000583441 ELAVL1Q15717 326 aaKnown RBP4.99□□□□□ -1.61
SMCHD1-209ENST00000583441 TIGD2Q4W5G0 525 aa4.99□□□□□ -1.61
SMCHD1-209ENST00000583441 HSP90AB2PQ58FF8 381 aa4.99□□□□□ -1.61
SMCHD1-209ENST00000583441 BROXQ5VW32 411 aa4.99□□□□□ -1.61
SMCHD1-209ENST00000583441 FRMD7Q6ZUT3 714 aa4.99□□□□□ -1.61
SMCHD1-209ENST00000583441 BOLLQ8N9W6 283 aaKnown RBP4.99□□□□□ -1.61
SMCHD1-209ENST00000583441 CLRN3Q8NCR9 226 aa4.99□□□□□ -1.61
SMCHD1-209ENST00000583441 ARHGAP28Q9P2N2 729 aa4.99□□□□□ -1.61
SMCHD1-209ENST00000583441 NOC2LQ9Y3T9 749 aaKnown RBP4.99□□□□□ -1.61
SMCHD1-209ENST00000583441 ASB1Q9Y576 335 aa4.99□□□□□ -1.61
SMCHD1-209ENST00000583441 SHTN1A0MZ66 631 aa4.98□□□□□ -1.61
SMCHD1-209ENST00000583441 FAM90A27PA6NNH2 459 aa4.98□□□□□ -1.61
SMCHD1-209ENST00000583441 ACOT7O00154 380 aa4.98□□□□□ -1.61
SMCHD1-209ENST00000583441 DVL2O14641 736 aa4.98□□□□□ -1.61
SMCHD1-209ENST00000583441 CFBP00751 764 aa4.98□□□□□ -1.61
SMCHD1-209ENST00000583441 NR4A1P22736 598 aa4.98□□□□□ -1.61
SMCHD1-209ENST00000583441 ABCG1P45844 678 aa4.98□□□□□ -1.61
SMCHD1-209ENST00000583441 ERVK-21P61565 698 aa4.98□□□□□ -1.61
SMCHD1-209ENST00000583441 DBPQ10586 325 aaPredicted RBP4.98□□□□□ -1.61
SMCHD1-209ENST00000583441 FOXF2Q12947 444 aa4.98□□□□□ -1.61
SMCHD1-209ENST00000583441 KLF1Q13351 362 aaPredicted RBP4.98□□□□□ -1.61
SMCHD1-209ENST00000583441 FSTL4Q6MZW2 842 aa4.98□□□□□ -1.61
SMCHD1-209ENST00000583441 ZBTB46Q86UZ6 589 aa4.98□□□□□ -1.61
SMCHD1-209ENST00000583441 C16orf92Q96LL3 132 aa4.98□□□□□ -1.61
SMCHD1-209ENST00000583441 ACAP3Q96P50 834 aa4.98□□□□□ -1.61
SMCHD1-209ENST00000583441 CAMKK2Q96RR4 588 aa4.98□□□□□ -1.61
SMCHD1-209ENST00000583441 SMAD5Q99717 465 aaKnown RBP4.98□□□□□ -1.61
SMCHD1-209ENST00000583441 WNT8AQ9H1J5 351 aa4.98□□□□□ -1.61
SMCHD1-209ENST00000583441 ZMAT4Q9H898 229 aa4.98□□□□□ -1.61
SMCHD1-209ENST00000583441 G3BP2Q9UN86 482 aaKnown RBP4.98□□□□□ -1.61
SMCHD1-209ENST00000583441 EID1Q9Y6B2 187 aa4.98□□□□□ -1.61
SMCHD1-209ENST00000583441 COL3A1P02461 1466 aaPredicted RBP4.98□□□□□ -1.61
SMCHD1-209ENST00000583441 GOLGA6L6A8MZA4 724 aa4.97□□□□□ -1.61
SMCHD1-209ENST00000583441 GABRDO14764 452 aa4.97□□□□□ -1.61
SMCHD1-209ENST00000583441 ZNF185O15231 689 aa4.97□□□□□ -1.61
SMCHD1-209ENST00000583441 KDM1AO60341 852 aa4.97□□□□□ -1.61
SMCHD1-209ENST00000583441 AOAHP28039 575 aa4.97□□□□□ -1.61
SMCHD1-209ENST00000583441 IL13RA1P78552 427 aa4.97□□□□□ -1.61
SMCHD1-209ENST00000583441 SEC23AQ15436 765 aa4.97□□□□□ -1.61
SMCHD1-209ENST00000583441 CATSPEREQ5SY80 951 aa4.97□□□□□ -1.61
SMCHD1-209ENST00000583441 TIGD7Q6NT04 549 aaPredicted RBP4.97□□□□□ -1.61
SMCHD1-209ENST00000583441 Q6YL49 198 aa4.97□□□□□ -1.61
SMCHD1-209ENST00000583441 PHYKPLQ8IUZ5 450 aa4.97□□□□□ -1.61
SMCHD1-209ENST00000583441 SRRM1Q8IYB3 904 aaKnown RBP4.97□□□□□ -1.61
SMCHD1-209ENST00000583441 C7orf31Q8N865 590 aa4.97□□□□□ -1.61
SMCHD1-209ENST00000583441 SSH1Q8WYL5 1049 aa4.97□□□□□ -1.61
SMCHD1-209ENST00000583441 RABGGTAQ92696 567 aa4.97□□□□□ -1.61
SMCHD1-209ENST00000583441 CCDC136Q96JN2 1154 aa4.97□□□□□ -1.61
SMCHD1-209ENST00000583441 SLC13A1Q9BZW2 595 aa4.97□□□□□ -1.61
SMCHD1-209ENST00000583441 KCNG1Q9UIX4 513 aa4.97□□□□□ -1.61
SMCHD1-209ENST00000583441 UBA6A0AVT1 1052 aaPredicted RBP4.96□□□□□ -1.62
SMCHD1-209ENST00000583441 MAFGO15525 162 aa4.96□□□□□ -1.62
SMCHD1-209ENST00000583441 PARNO95453 639 aaKnown RBP4.96□□□□□ -1.62
SMCHD1-209ENST00000583441 PTX3P26022 381 aaPredicted RBP4.96□□□□□ -1.62
SMCHD1-209ENST00000583441 KRTAP5-9P26371 169 aa4.96□□□□□ -1.62
SMCHD1-209ENST00000583441 PTH2RP49190 550 aa4.96□□□□□ -1.62
SMCHD1-209ENST00000583441 ZNF81P51508 661 aa4.96□□□□□ -1.62
SMCHD1-209ENST00000583441 MCL1Q07820 350 aa4.96□□□□□ -1.62
SMCHD1-209ENST00000583441 PIN1Q13526 163 aaPredicted RBP4.96□□□□□ -1.62
SMCHD1-209ENST00000583441 TTC38Q5R3I4 469 aa4.96□□□□□ -1.62
SMCHD1-209ENST00000583441 ESRP1Q6NXG1 681 aaKnown RBP4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms