RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 GALNT11Q8NCW6 608 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 CCDC148Q8NFR7 591 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 MORC4Q8TE76 937 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 GDPD5Q8WTR4 605 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 WFDC12Q8WWY7 111 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 RRP36Q96EU6 259 aaKnown RBP11.55□□□□□ -0.56
SS18-221ENST00000582448 AIFM3Q96NN9 605 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 KRTAP4-6Q9BYQ5 205 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 SH3GLB2Q9NR46 395 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 DZANK1Q9NVP4 752 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 RTEL1Q9NZ71 1219 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 RCOR1Q9UKL0 485 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 NOL7Q9UMY1 257 aaKnown RBP11.55□□□□□ -0.56
SS18-221ENST00000582448 CEP131Q9UPN4 1083 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 LCHNA4D1U4 455 aa11.54□□□□□ -0.56
SS18-221ENST00000582448 TXNP10599 105 aaKnown RBP11.54□□□□□ -0.56
SS18-221ENST00000582448 EPHA1P21709 976 aa11.54□□□□□ -0.56
SS18-221ENST00000582448 NOS3P29474 1203 aa11.54□□□□□ -0.56
SS18-221ENST00000582448 DEKP35659 375 aaKnown RBP11.54□□□□□ -0.56
SS18-221ENST00000582448 NLRP5P59047 1200 aa11.54□□□□□ -0.56
SS18-221ENST00000582448 PTGISQ16647 500 aa11.54□□□□□ -0.56
SS18-221ENST00000582448 PFKFB3Q16875 520 aaPredicted RBP11.54□□□□□ -0.56
SS18-221ENST00000582448 GPATCH4Q5T3I0 446 aaKnown RBP11.54□□□□□ -0.56
SS18-221ENST00000582448 CCDC183Q5T5S1 534 aa11.54□□□□□ -0.56
SS18-221ENST00000582448 SYDE2Q5VT97 1194 aa11.54□□□□□ -0.56
SS18-221ENST00000582448 FAM117BQ6P1L5 589 aa11.54□□□□□ -0.56
SS18-221ENST00000582448 NFRKBQ6P4R8 1299 aa11.54□□□□□ -0.56
SS18-221ENST00000582448 SLC30A10Q6XR72 485 aa11.54□□□□□ -0.56
SS18-221ENST00000582448 RNF207Q6ZRF8 634 aa11.54□□□□□ -0.56
SS18-221ENST00000582448 CCDC73Q6ZRK6 1079 aa11.54□□□□□ -0.56
SS18-221ENST00000582448 GLYCTKQ8IVS8 523 aa11.54□□□□□ -0.56
SS18-221ENST00000582448 SRBD1Q8N5C6 995 aaKnown RBP11.54□□□□□ -0.56
SS18-221ENST00000582448 UIMC1Q96RL1 719 aa11.54□□□□□ -0.56
SS18-221ENST00000582448 SSBP4Q9BWG4 385 aaPredicted RBP11.54□□□□□ -0.56
SS18-221ENST00000582448 SPZ1Q9BXG8 430 aa11.54□□□□□ -0.56
SS18-221ENST00000582448 RANBP17Q9H2T7 1088 aaKnown RBP11.54□□□□□ -0.56
SS18-221ENST00000582448 MAD2L2Q9UI95 211 aa11.54□□□□□ -0.56
SS18-221ENST00000582448 XIRP2A4UGR9 3374 aa11.54□□□□□ -0.56
SS18-221ENST00000582448 CHD9Q3L8U1 2897 aa11.53□□□□□ -0.56
SS18-221ENST00000582448 RBM47A0AV96 593 aaKnown RBP11.53□□□□□ -0.56
SS18-221ENST00000582448 hCG_1984214I3L0E3 225 aa11.53□□□□□ -0.56
SS18-221ENST00000582448 TM4SF5O14894 197 aa11.53□□□□□ -0.56
SS18-221ENST00000582448 KPNA6O60684 536 aa11.53□□□□□ -0.56
SS18-221ENST00000582448 PHACTR2O75167 634 aa11.53□□□□□ -0.56
SS18-221ENST00000582448 NOVP48745 357 aa11.53□□□□□ -0.56
SS18-221ENST00000582448 EHHADHQ08426 723 aa11.53□□□□□ -0.56
SS18-221ENST00000582448 ZSCAN23Q3MJ62 389 aa11.53□□□□□ -0.56
SS18-221ENST00000582448 GALNT17Q6IS24 598 aa11.53□□□□□ -0.56
SS18-221ENST00000582448 ZNF713Q8N859 430 aaPredicted RBP11.53□□□□□ -0.56
SS18-221ENST00000582448 SNX29Q8TEQ0 813 aa11.53□□□□□ -0.56
SS18-221ENST00000582448 DCAF4Q8WV16 495 aa11.53□□□□□ -0.56
SS18-221ENST00000582448 USP28Q96RU2 1077 aa11.53□□□□□ -0.56
SS18-221ENST00000582448 MPHOSPH6Q99547 160 aaKnown RBP11.53□□□□□ -0.56
SS18-221ENST00000582448 CD320Q9NPF0 282 aa11.53□□□□□ -0.56
SS18-221ENST00000582448 GJB4Q9NTQ9 266 aa11.53□□□□□ -0.56
SS18-221ENST00000582448 VPS54Q9P1Q0 977 aa11.53□□□□□ -0.56
SS18-221ENST00000582448 KCNJ14Q9UNX9 436 aa11.53□□□□□ -0.56
SS18-221ENST00000582448 CHD7Q9P2D1 2997 aa11.52□□□□□ -0.56
SS18-221ENST00000582448 SCN5AQ14524 2016 aa11.52□□□□□ -0.56
SS18-221ENST00000582448 BTBD18B2RXH4 712 aa11.52□□□□□ -0.57
SS18-221ENST00000582448 NKRFO15226 690 aaKnown RBP eCLIP11.52□□□□□ -0.57
SS18-221ENST00000582448 SPTLC2O15270 562 aa11.52□□□□□ -0.57
SS18-221ENST00000582448 LPXNO60711 386 aa11.52□□□□□ -0.57
SS18-221ENST00000582448 BAIAP3O94812 1187 aa11.52□□□□□ -0.57
SS18-221ENST00000582448 BMP15O95972 392 aa11.52□□□□□ -0.57
SS18-221ENST00000582448 ZNF445P59923 1031 aa11.52□□□□□ -0.57
SS18-221ENST00000582448 WDR5P61964 334 aaKnown RBP11.52□□□□□ -0.57
SS18-221ENST00000582448 RPS6P62753 249 aaKnown RBP11.52□□□□□ -0.57
SS18-221ENST00000582448 DEFB103AP81534 67 aa11.52□□□□□ -0.57
SS18-221ENST00000582448 PKN1Q16512 942 aa11.52□□□□□ -0.57
SS18-221ENST00000582448 SEPT14Q6ZU15 432 aa11.52□□□□□ -0.57
SS18-221ENST00000582448 HEATR3Q7Z4Q2 680 aa11.52□□□□□ -0.57
SS18-221ENST00000582448 SCFD2Q8WU76 684 aa11.52□□□□□ -0.57
SS18-221ENST00000582448 CLEC4DQ8WXI8 215 aa11.52□□□□□ -0.57
SS18-221ENST00000582448 PIBF1Q8WXW3 757 aa11.52□□□□□ -0.57
SS18-221ENST00000582448 PMEPA1Q969W9 287 aa11.52□□□□□ -0.57
SS18-221ENST00000582448 PHF20Q9BVI0 1012 aa11.52□□□□□ -0.57
SS18-221ENST00000582448 ADAM19Q9H013 955 aa11.52□□□□□ -0.57
SS18-221ENST00000582448 MUC3BQ9H195 1237 aa11.52□□□□□ -0.57
SS18-221ENST00000582448 SRA1Q9HD15 236 aaKnown RBP11.52□□□□□ -0.57
SS18-221ENST00000582448 DDX19AQ9NUU7 478 aaKnown RBP11.52□□□□□ -0.57
SS18-221ENST00000582448 hCG_1642624A0A1W2PR95 340 aa11.51□□□□□ -0.57
SS18-221ENST00000582448 PI4K2BG5E9Z4 385 aa11.51□□□□□ -0.57
SS18-221ENST00000582448 ALX3O95076 343 aa11.51□□□□□ -0.57
SS18-221ENST00000582448 ARIH2O95376 493 aa11.51□□□□□ -0.57
SS18-221ENST00000582448 GOLGA8HP0CJ92 632 aa11.51□□□□□ -0.57
SS18-221ENST00000582448 PDHBP11177 359 aa11.51□□□□□ -0.57
SS18-221ENST00000582448 GNA11P29992 359 aa11.51□□□□□ -0.57
SS18-221ENST00000582448 NASPP49321 788 aaPredicted RBP11.51□□□□□ -0.57
SS18-221ENST00000582448 MRE11P49959 708 aa11.51□□□□□ -0.57
SS18-221ENST00000582448 PTPN11Q06124 597 aaPredicted RBP11.51□□□□□ -0.57
SS18-221ENST00000582448 LY6KQ17RY6 165 aa11.51□□□□□ -0.57
SS18-221ENST00000582448 USH1GQ495M9 461 aa11.51□□□□□ -0.57
SS18-221ENST00000582448 EP400NLQ6ZTU2 488 aa11.51□□□□□ -0.57
SS18-221ENST00000582448 AFG1LQ8WV93 481 aa11.51□□□□□ -0.57
SS18-221ENST00000582448 ANP32BQ92688 251 aaKnown RBP11.51□□□□□ -0.57
SS18-221ENST00000582448 SUGCTQ9HAC7 445 aa11.51□□□□□ -0.57
SS18-221ENST00000582448 C6orf50Q9HD87 102 aa11.51□□□□□ -0.57
SS18-221ENST00000582448 A0A1W2PQ27 194 aa11.5□□□□□ -0.57
SS18-221ENST00000582448 A0A1W2PQ64 194 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms