RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 WDR59Q6PJI9 974 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 CYP26C1Q6V0L0 522 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 CACNA2D4Q7Z3S7 1137 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 RHPN2Q8IUC4 686 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 CBWD2Q8IUF1 395 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 ZBTB8OSQ8IWT0 167 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 LINC01465Q8N7H1 131 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 RNF149Q8NC42 400 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 ZNF397Q8NF99 534 aaPredicted RBP11.46□□□□□ -0.57
SS18-217ENST00000580958 PLEKHO2Q8TD55 490 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 BAP1Q92560 729 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 ZNF668Q96K58 619 aaPredicted RBP11.46□□□□□ -0.57
SS18-217ENST00000580958 ZBTB45Q96K62 511 aaPredicted RBP11.46□□□□□ -0.57
SS18-217ENST00000580958 PPP1R13BQ96KQ4 1090 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 CHP1Q99653 195 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 DESI2Q9BSY9 194 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 CCDC113Q9H0I3 377 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 AP5M1Q9H0R1 490 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 C2orf40Q9H1Z8 148 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 NLRC4Q9NPP4 1024 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 CEP72Q9P209 647 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 SCN10AQ9Y5Y9 1956 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 GTPBP10A4D1E9 387 aaKnown RBP11.45□□□□□ -0.58
SS18-217ENST00000580958 LRRC53A6NM62 1247 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 ASAP2O43150 1006 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 CCP110O43303 1012 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 PRKCBP05771 671 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 MYL3P08590 195 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 PON1P27169 355 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 MATR3P43243 847 aaKnown RBP eCLIP11.45□□□□□ -0.589e-6■■■■□ 21.7
SS18-217ENST00000580958 EFNA5P52803 228 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 CHMP4BP1P59074 171 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 POLR2FP61218 127 aaKnown RBP11.45□□□□□ -0.58
SS18-217ENST00000580958 DLG4P78352 724 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 BEX3Q00994 111 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 SP3Q02447 781 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 PRKCZQ05513 592 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 CYP24A1Q07973 514 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 GRIK4Q16099 956 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 SNRNP35Q16560 246 aaKnown RBP11.45□□□□□ -0.58
SS18-217ENST00000580958 MEA1Q16626 185 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 CBWD6Q4V339 395 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 CBWD3Q5JTY5 395 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 CBWD5Q5RIA9 395 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 C1orf220Q5T0J3 134 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 MFSD14CQ5VZR4 134 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 MTHFD1LQ6UB35 978 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 RRAGAQ7L523 313 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 GPIHBP1Q8IV16 184 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 GPD1LQ8N335 351 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 ZNF784Q8NCA9 323 aaPredicted RBP11.45□□□□□ -0.58
SS18-217ENST00000580958 TRIB2Q92519 343 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 KAT2BQ92831 832 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 MFSD14AQ96MC6 490 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 FBXL18Q96ME1 805 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 NLRP4Q96MN2 994 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 TARS2Q9BW92 718 aaKnown RBP11.45□□□□□ -0.58
SS18-217ENST00000580958 HAPLN2Q9GZV7 340 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 SIX2Q9NPC8 291 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 PLCB1Q9NQ66 1216 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 ZNHIT6Q9NWK9 470 aaKnown RBP11.45□□□□□ -0.58
SS18-217ENST00000580958 GCNT4Q9P109 453 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 PPP2R2CQ9Y2T4 447 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 STYXL1Q9Y6J8 313 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 THSD7BQ9C0I4 1608 aa11.45□□□□□ -0.58
SS18-217ENST00000580958 FRMPD3Q5JV73 1810 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 TULP1O00294 542 aaPredicted RBP11.44□□□□□ -0.58
SS18-217ENST00000580958 ZSCAN12O43309 604 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 EXTL3O43909 919 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 N4BP1O75113 896 aaKnown RBP11.44□□□□□ -0.58
SS18-217ENST00000580958 OFD1O75665 1012 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 TRPA1O75762 1119 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 F2P00734 622 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 CYBAP13498 195 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 AKR1A1P14550 325 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 YY1P25490 414 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 PSEN2P49810 448 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 CPT1AP50416 773 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 NLRP11P59045 1033 aaKnown RBP11.44□□□□□ -0.58
SS18-217ENST00000580958 PTENP60484 403 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 PPP3CAQ08209 521 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 TRIM32Q13049 653 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 MFSD10Q14728 455 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 KIF22Q14807 665 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 KIAA0753Q2KHM9 967 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 DNTTIP2Q5QJE6 756 aaKnown RBP11.44□□□□□ -0.58
SS18-217ENST00000580958 KLHDC7AQ5VTJ3 777 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 SLFN12LQ6IEE8 588 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 REXO1L1PQ8IX06 675 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 ACRBPQ8NEB7 543 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 PPP1R13LQ8WUF5 828 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 C16orf45Q96MC5 204 aaPredicted RBP11.44□□□□□ -0.58
SS18-217ENST00000580958 PPP1R16BQ96T49 567 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 FAM213AQ9BRX8 229 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 MRPL4Q9BYD3 311 aaKnown RBP11.44□□□□□ -0.58
SS18-217ENST00000580958 INTS2Q9H0H0 1204 aaKnown RBP11.44□□□□□ -0.58
SS18-217ENST00000580958 RNF186Q9NXI6 227 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 ANKFY1Q9P2R3 1169 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 AJAP1Q9UKB5 411 aaPredicted RBP11.44□□□□□ -0.58
SS18-217ENST00000580958 AGO2Q9UKV8 859 aaKnown RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms