RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 PHLDB3Q6NSJ2 640 aa11.57□□□□□ -0.56
CCDC40-207ENST00000572253 SLC13A5Q86YT5 568 aaPredicted RBP11.57□□□□□ -0.56
CCDC40-207ENST00000572253 EPS8L3Q8TE67 593 aaKnown RBP11.57□□□□□ -0.56
CCDC40-207ENST00000572253 LARSQ9P2J5 1176 aaKnown RBP11.57□□□□□ -0.56
CCDC40-207ENST00000572253 PTPN22Q9Y2R2 807 aa11.57□□□□□ -0.56
CCDC40-207ENST00000572253 A0A1B0GUA9 196 aa11.56□□□□□ -0.56
CCDC40-207ENST00000572253 POLR2MP0CAP2 368 aa11.56□□□□□ -0.56
CCDC40-207ENST00000572253 VAMP7P51809 220 aa11.56□□□□□ -0.56
CCDC40-207ENST00000572253 RWDD2BP57060 319 aa11.56□□□□□ -0.56
CCDC40-207ENST00000572253 PALB2Q86YC2 1186 aa11.56□□□□□ -0.56
CCDC40-207ENST00000572253 OLIG1Q8TAK6 271 aa11.56□□□□□ -0.56
CCDC40-207ENST00000572253 CCHCR1Q8TD31 782 aa11.56□□□□□ -0.56
CCDC40-207ENST00000572253 TCP11Q8WWU5 503 aa11.56□□□□□ -0.56
CCDC40-207ENST00000572253 FOCADQ5VW36 1801 aa11.56□□□□□ -0.56
CCDC40-207ENST00000572253 PIK3CDO00329 1044 aa11.56□□□□□ -0.56
CCDC40-207ENST00000572253 CLTAP09496 248 aa11.56□□□□□ -0.56
CCDC40-207ENST00000572253 GZMAP12544 262 aa11.56□□□□□ -0.56
CCDC40-207ENST00000572253 SF3A3Q12874 501 aaKnown RBP eCLIP11.56□□□□□ -0.56
CCDC40-207ENST00000572253 FAM133BQ5BKY9 247 aaKnown RBP11.56□□□□□ -0.56
CCDC40-207ENST00000572253 RBM26Q5T8P6 1007 aaKnown RBP11.56□□□□□ -0.56
CCDC40-207ENST00000572253 AADACL2Q6P093 401 aa11.56□□□□□ -0.56
CCDC40-207ENST00000572253 GBP7Q8N8V2 638 aaPredicted RBP11.56□□□□□ -0.56
CCDC40-207ENST00000572253 MAIP1Q8WWC4 291 aa11.56□□□□□ -0.56
CCDC40-207ENST00000572253 C8orf37Q96NL8 207 aa11.56□□□□□ -0.56
CCDC40-207ENST00000572253 TEKT3Q9BXF9 490 aa11.56□□□□□ -0.56
CCDC40-207ENST00000572253 NOD2Q9HC29 1040 aa11.56□□□□□ -0.56
CCDC40-207ENST00000572253 LRRC4CQ9HCJ2 640 aa11.56□□□□□ -0.56
CCDC40-207ENST00000572253 C21orf2O43822 256 aa11.56□□□□□ -0.56
CCDC40-207ENST00000572253 ZNF746Q6NUN9 644 aaPredicted RBP11.56□□□□□ -0.56
CCDC40-207ENST00000572253 ZNF564Q8TBZ8 553 aaPredicted RBP11.56□□□□□ -0.56
CCDC40-207ENST00000572253 RSRC1Q96IZ7 334 aaKnown RBP11.56□□□□□ -0.56
CCDC40-207ENST00000572253 IFT74Q96LB3 600 aa11.56□□□□□ -0.56
CCDC40-207ENST00000572253 ACCSQ96QU6 501 aa11.56□□□□□ -0.56
CCDC40-207ENST00000572253 DNAJC18Q9H819 358 aa11.56□□□□□ -0.56
CCDC40-207ENST00000572253 ASIC3Q9UHC3 531 aa11.56□□□□□ -0.56
CCDC40-207ENST00000572253 PSMD10O75832 226 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 GDF11O95390 407 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 ATP6V1G2O95670 118 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 MAN1A1P33908 653 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 AUHQ13825 339 aaKnown RBP11.55□□□□□ -0.56
CCDC40-207ENST00000572253 RNF207Q6ZRF8 634 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 SLC5A5Q92911 643 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 ART4Q93070 314 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 ZNF653Q96CK0 615 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 ZNF577Q9BSK1 485 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 IGLV3-22A0A075B6J6 115 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 HIP1RO75146 1068 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 SLURP2P0DP57 97 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 GYS1P13807 737 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 MARCKSL1P49006 195 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 MXI1P50539 228 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 CACNB3P54284 484 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 TNIP1Q15025 636 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 MFSD5Q6N075 450 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 TBC1D1Q86TI0 1168 aaPredicted RBP11.55□□□□□ -0.56
CCDC40-207ENST00000572253 ZFPM1Q8IX07 1006 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 PCIF1Q9H4Z3 704 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 ATP6V0A4Q9HBG4 840 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 KCNK9Q9NPC2 374 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 USP15Q9Y4E8 981 aaPredicted RBP11.55□□□□□ -0.56
CCDC40-207ENST00000572253 CD2APQ9Y5K6 639 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 KIF1CO43896 1103 aaKnown RBP11.55□□□□□ -0.56
CCDC40-207ENST00000572253 MTA2O94776 668 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 ALAS1P13196 640 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 CLNS1AP54105 237 aaKnown RBP11.55□□□□□ -0.56
CCDC40-207ENST00000572253 MFAP3P55082 362 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 CNGA2Q16280 664 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 CYP1B1Q16678 543 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 TTC27Q6P3X3 843 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 MGARPQ8TDB4 240 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 ZDHHC15Q96MV8 337 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 SERPINB12Q96P63 405 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 NUP85Q9BW27 656 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 ADAM7Q9H2U9 754 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.55□□□□□ -0.56
CCDC40-207ENST00000572253 UVRAGQ9P2Y5 699 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 DBR1Q9UK59 544 aaKnown RBP11.55□□□□□ -0.56
CCDC40-207ENST00000572253 SLC12A4Q9UP95 1085 aa11.55□□□□□ -0.56
CCDC40-207ENST00000572253 OPLAHO14841 1288 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 GCLMP48507 274 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 SGO2Q562F6 1265 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 ARHGEF2Q92974 986 aaKnown RBP11.54□□□□□ -0.56
CCDC40-207ENST00000572253 PRR12Q9ULL5 1215 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 GAS8O95995 478 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 PYGMP11217 842 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 CCDC38Q502W7 563 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 CEP55Q53EZ4 464 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 ARHGEF19Q8IW93 802 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 XXYLT1Q8NBI6 393 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 GRK7Q8WTQ7 553 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 KIFAP3Q92845 792 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 TBC1D31Q96DN5 1066 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 CCDC77Q9BR77 488 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 LXNQ9BS40 222 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 WDR18Q9BV38 432 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 WHRNQ9P202 907 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 DDTLA6NHG4 134 aaPredicted RBP11.54□□□□□ -0.56
CCDC40-207ENST00000572253 PEX5P50542 639 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 STAT2P52630 851 aa11.54□□□□□ -0.56
CCDC40-207ENST00000572253 RIPK1Q13546 671 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms