RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 TGFB1I1O43294 461 aa9.28□□□□□ -0.92
SF3B3-212ENST00000568539 TSPAN1O60635 241 aa9.28□□□□□ -0.92
SF3B3-212ENST00000568539 KIF20AO95235 890 aa9.28□□□□□ -0.92
SF3B3-212ENST00000568539 PIGRP01833 764 aa9.28□□□□□ -0.92
SF3B3-212ENST00000568539 PRKCBP05771 671 aa9.28□□□□□ -0.92
SF3B3-212ENST00000568539 CCDC192P0DO97 292 aa9.28□□□□□ -0.92
SF3B3-212ENST00000568539 GHRP10912 638 aa9.28□□□□□ -0.92
SF3B3-212ENST00000568539 FGFR4P22455 802 aa9.28□□□□□ -0.92
SF3B3-212ENST00000568539 SFPQP23246 707 aaKnown RBP eCLIP9.28□□□□□ -0.92
SF3B3-212ENST00000568539 ITGB8P26012 769 aa9.28□□□□□ -0.92
SF3B3-212ENST00000568539 CYP2C18P33260 490 aa9.28□□□□□ -0.92
SF3B3-212ENST00000568539 PPP1R2P41236 205 aa9.28□□□□□ -0.92
SF3B3-212ENST00000568539 PCBP1Q15365 356 aaKnown RBP eCLIP9.28□□□□□ -0.92
SF3B3-212ENST00000568539 STX1AQ16623 288 aa9.28□□□□□ -0.92
SF3B3-212ENST00000568539 KNOP1Q1ED39 458 aaKnown RBP9.28□□□□□ -0.92
SF3B3-212ENST00000568539 TSHZ1Q6ZSZ6 1077 aa9.28□□□□□ -0.92
SF3B3-212ENST00000568539 FAM228AQ86W67 206 aa9.28□□□□□ -0.92
SF3B3-212ENST00000568539 NELFCDQ8IXH7 590 aa9.28□□□□□ -0.92
SF3B3-212ENST00000568539 USP38Q8NB14 1042 aa9.28□□□□□ -0.92
SF3B3-212ENST00000568539 PRIMPOLQ96LW4 560 aa9.28□□□□□ -0.92
SF3B3-212ENST00000568539 ACCSQ96QU6 501 aa9.28□□□□□ -0.92
SF3B3-212ENST00000568539 IKZF4Q9H2S9 585 aa9.28□□□□□ -0.92
SF3B3-212ENST00000568539 KCTD10Q9H3F6 313 aa9.28□□□□□ -0.92
SF3B3-212ENST00000568539 TMEM206Q9H813 350 aa9.28□□□□□ -0.92
SF3B3-212ENST00000568539 AGO3Q9H9G7 860 aaKnown RBP9.28□□□□□ -0.92
SF3B3-212ENST00000568539 PRDM5Q9NQX1 630 aaPredicted RBP9.28□□□□□ -0.92
SF3B3-212ENST00000568539 ANO10Q9NW15 660 aa9.28□□□□□ -0.92
SF3B3-212ENST00000568539 USP20Q9Y2K6 914 aa9.28□□□□□ -0.92
SF3B3-212ENST00000568539 CNTNAP2Q9UHC6 1331 aa9.28□□□□□ -0.92
SF3B3-212ENST00000568539 DNAH12Q6ZR08 3092 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 PSMA7O14818 248 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 NBNO60934 754 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 RPS6KA5O75582 802 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 ERLIN2O94905 339 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 PARNO95453 639 aaKnown RBP9.27□□□□□ -0.93
SF3B3-212ENST00000568539 TIMP1P01033 207 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 ARF4P18085 180 aaPredicted RBP9.27□□□□□ -0.93
SF3B3-212ENST00000568539 HOXA11P31270 313 aaPredicted RBP9.27□□□□□ -0.93
SF3B3-212ENST00000568539 CCL23P55773 120 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 ZNF445P59923 1031 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 PRPF4BQ13523 1007 aaKnown RBP9.27□□□□□ -0.93
SF3B3-212ENST00000568539 STIM1Q13586 685 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 ZCWPW2Q504Y3 356 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 CENPPQ6IPU0 288 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 SLC39A4Q6P5W5 647 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 ZPBP2Q6X784 338 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 C11orf57Q6ZUT1 292 aaPredicted RBP9.27□□□□□ -0.93
SF3B3-212ENST00000568539 CATSPER4Q7RTX7 472 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 C7orf61Q8IZ16 206 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 SYCP3Q8IZU3 236 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 DHTKD1Q96HY7 919 aaPredicted RBP9.27□□□□□ -0.93
SF3B3-212ENST00000568539 SCLYQ96I15 445 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 TARS2Q9BW92 718 aaKnown RBP9.27□□□□□ -0.93
SF3B3-212ENST00000568539 MRPL4Q9BYD3 311 aaKnown RBP9.27□□□□□ -0.93
SF3B3-212ENST00000568539 SEMA6BQ9H3T3 888 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 ERVK-5Q9HDB9 667 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 AGPAT5Q9NUQ2 364 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 DACH1Q9UI36 760 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 PADI3Q9ULW8 664 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 ST3GAL5Q9UNP4 418 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 EXOC7Q9UPT5 735 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 LOXHD1Q8IVV2 1947 aa9.27□□□□□ -0.93
SF3B3-212ENST00000568539 KIAA0100Q14667 2235 aaKnown RBP9.26□□□□□ -0.93
SF3B3-212ENST00000568539 A0A1B0GUA9 196 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 TISP43B9A030 160 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 ANKRD63C9JTQ0 380 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 PDXKO00764 312 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 ABLIM1O14639 778 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 HNRNPDLO14979 420 aaKnown RBP9.26□□□□□ -0.93
SF3B3-212ENST00000568539 GPR182O15218 404 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 TOM1L1O75674 476 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 CXCL10P02778 98 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 RAG1P15918 1043 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 CCNE1P24864 410 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 ERCC5P28715 1186 aaPredicted RBP9.26□□□□□ -0.93
SF3B3-212ENST00000568539 AXLP30530 894 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 CD52P31358 61 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 RFC2P35250 354 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 LIG4P49917 911 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 PMS1P54277 932 aaKnown RBP9.26□□□□□ -0.93
SF3B3-212ENST00000568539 NFX1Q12986 1120 aaKnown RBP9.26□□□□□ -0.93
SF3B3-212ENST00000568539 PAK1Q13153 545 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 PAK2Q13177 524 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 ANO6Q4KMQ2 910 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 PLEKHG4Q58EX7 1191 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 CT47A1Q5JQC4 288 aaPredicted RBP9.26□□□□□ -0.93
SF3B3-212ENST00000568539 ATF7IP2Q5U623 682 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 KLHL10Q6JEL2 608 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 MFSD5Q6N075 450 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 LRSAM1Q6UWE0 723 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 NELFBQ8WX92 580 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 P2RX5Q93086 422 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 VWCEQ96DN2 955 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 BICD1Q96G01 975 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 CPB2Q96IY4 423 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 MED15Q96RN5 788 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 ACO2Q99798 780 aaKnown RBP9.26□□□□□ -0.93
SF3B3-212ENST00000568539 GBP3Q9H0R5 595 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 DNAJC25Q9H1X3 360 aa9.26□□□□□ -0.93
SF3B3-212ENST00000568539 TMX1Q9H3N1 280 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms