RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ZEB2O60315 1214 aa4.1□□□□□ -1.75
VPS35-207ENST00000568191 ULK1O75385 1050 aa4.1□□□□□ -1.75
VPS35-207ENST00000568191 SEC24DO94855 1032 aaPredicted RBP4.1□□□□□ -1.75
VPS35-207ENST00000568191 ABHD16AO95870 558 aa4.1□□□□□ -1.75
VPS35-207ENST00000568191 GASTP01350 101 aa4.1□□□□□ -1.75
VPS35-207ENST00000568191 ITGB1P05556 798 aa4.1□□□□□ -1.75
VPS35-207ENST00000568191 CPEP16870 476 aa4.1□□□□□ -1.75
VPS35-207ENST00000568191 LAG3P18627 525 aa4.1□□□□□ -1.75
VPS35-207ENST00000568191 CASRP41180 1078 aa4.1□□□□□ -1.75
VPS35-207ENST00000568191 DHCR24Q15392 516 aa4.1□□□□□ -1.75
VPS35-207ENST00000568191 C19orf54Q5BKX5 351 aa4.1□□□□□ -1.75
VPS35-207ENST00000568191 DALRD3Q5D0E6 543 aaKnown RBP4.1□□□□□ -1.75
VPS35-207ENST00000568191 BROXQ5VW32 411 aa4.1□□□□□ -1.75
VPS35-207ENST00000568191 CCDC62Q6P9F0 684 aa4.1□□□□□ -1.75
VPS35-207ENST00000568191 KCNV1Q6PIU1 500 aa4.1□□□□□ -1.75
VPS35-207ENST00000568191 DOK3Q7L591 496 aa4.1□□□□□ -1.75
VPS35-207ENST00000568191 KIAA0907Q7Z7F0 614 aaPredicted RBP4.1□□□□□ -1.75
VPS35-207ENST00000568191 PIK3C3Q8NEB9 887 aa4.1□□□□□ -1.75
VPS35-207ENST00000568191 ZG16BQ96DA0 208 aa4.1□□□□□ -1.75
VPS35-207ENST00000568191 TTC1Q99614 292 aa4.1□□□□□ -1.75
VPS35-207ENST00000568191 TTPALQ9BTX7 342 aa4.1□□□□□ -1.75
VPS35-207ENST00000568191 PRSS50Q9UI38 385 aa4.1□□□□□ -1.75
VPS35-207ENST00000568191 B5MCH6 92 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 DIRC3C9JPN6 131 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 PDE8AO60658 829 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 PHF2O75151 1096 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 HLA-DOAP06340 250 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 CLEC2LP0C7M8 214 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 SPATA31D3P0C874 917 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 ADCYAP1R1P41586 468 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 SESN3P58005 492 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 SLC25A3Q00325 362 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 APBA1Q02410 837 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 TAP1Q03518 808 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 FAPQ12884 760 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 UBE3CQ15386 1083 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 VPS72Q15906 364 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 UGT8Q16880 541 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 ZBTB41Q5SVQ8 909 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 SPATA31D4Q6ZUB0 917 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 PROKR1Q8TCW9 393 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 RAX2Q96IS3 184 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 ACAP3Q96P50 834 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 NDC1Q9BTX1 674 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 IFT22Q9H7X7 185 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 CYP4F11Q9HBI6 524 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 SPON1Q9HCB6 807 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 EMC7Q9NPA0 242 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.09□□□□□ -1.75
VPS35-207ENST00000568191 TRPS1Q9UHF7 1281 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 ZBTB21Q9ULJ3 1066 aa4.09□□□□□ -1.75
VPS35-207ENST00000568191 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.09□□□□□ -1.75
VPS35-207ENST00000568191 A0A1W2PR48 441 aa4.08□□□□□ -1.76
VPS35-207ENST00000568191 GAGE12BA1L429 117 aa4.08□□□□□ -1.76
VPS35-207ENST00000568191 GAGE12HA6NDE8 117 aa4.08□□□□□ -1.76
VPS35-207ENST00000568191 RNASET2O00584 256 aaKnown RBP4.08□□□□□ -1.76
VPS35-207ENST00000568191 ENPP3O14638 875 aa4.08□□□□□ -1.76
VPS35-207ENST00000568191 FOXN1O15353 648 aa4.08□□□□□ -1.76
VPS35-207ENST00000568191 STC2O76061 302 aa4.08□□□□□ -1.76
VPS35-207ENST00000568191 SOX5P35711 763 aa4.08□□□□□ -1.76
VPS35-207ENST00000568191 MANFP55145 182 aaKnown RBP4.08□□□□□ -1.76
VPS35-207ENST00000568191 SEPT7Q16181 437 aaKnown RBP4.08□□□□□ -1.76
VPS35-207ENST00000568191 FAM214AQ32MH5 1076 aa4.08□□□□□ -1.76
VPS35-207ENST00000568191 PLEKHG4Q58EX7 1191 aa4.08□□□□□ -1.76
VPS35-207ENST00000568191 CT47A1Q5JQC4 288 aaPredicted RBP4.08□□□□□ -1.76
VPS35-207ENST00000568191 EFCAB12Q6NXP0 572 aa4.08□□□□□ -1.76
VPS35-207ENST00000568191 LDLRAD3Q86YD5 345 aa4.08□□□□□ -1.76
VPS35-207ENST00000568191 DNAJC10Q8IXB1 793 aa4.08□□□□□ -1.76
VPS35-207ENST00000568191 OR52N2Q8NGI0 321 aa4.08□□□□□ -1.76
VPS35-207ENST00000568191 SLC46A2Q9BY10 475 aa4.08□□□□□ -1.76
VPS35-207ENST00000568191 ENKD1Q9H0I2 346 aa4.08□□□□□ -1.76
VPS35-207ENST00000568191 KCNH6Q9H252 994 aa4.08□□□□□ -1.76
VPS35-207ENST00000568191 GPRC5BQ9NZH0 403 aa4.08□□□□□ -1.76
VPS35-207ENST00000568191 POGKQ9P215 609 aa4.08□□□□□ -1.76
VPS35-207ENST00000568191 GSG1L2A8MUP6 293 aa4.07□□□□□ -1.76
VPS35-207ENST00000568191 B3GALT2O43825 422 aa4.07□□□□□ -1.76
VPS35-207ENST00000568191 GCP02774 474 aa4.07□□□□□ -1.76
VPS35-207ENST00000568191 RBP3P10745 1247 aa4.07□□□□□ -1.76
VPS35-207ENST00000568191 MTHFD2P13995 350 aa4.07□□□□□ -1.76
VPS35-207ENST00000568191 USP14P54578 494 aa4.07□□□□□ -1.76
VPS35-207ENST00000568191 LGALS4P56470 323 aa4.07□□□□□ -1.76
VPS35-207ENST00000568191 FSTL1Q12841 308 aa4.07□□□□□ -1.76
VPS35-207ENST00000568191 DRICH1Q6PGQ1 229 aaPredicted RBP4.07□□□□□ -1.76
VPS35-207ENST00000568191 LRRC55Q6ZSA7 311 aa4.07□□□□□ -1.76
VPS35-207ENST00000568191 HDGFL2Q7Z4V5 671 aaPredicted RBP4.07□□□□□ -1.76
VPS35-207ENST00000568191 MRGPREQ86SM8 312 aa4.07□□□□□ -1.76
VPS35-207ENST00000568191 JAZF1Q86VZ6 243 aa4.07□□□□□ -1.76
VPS35-207ENST00000568191 ZFP28Q8NHY6 868 aa4.07□□□□□ -1.76
VPS35-207ENST00000568191 SNX33Q8WV41 574 aa4.07□□□□□ -1.76
VPS35-207ENST00000568191 CRAMP1Q96RY5 1269 aa4.07□□□□□ -1.76
VPS35-207ENST00000568191 FDXACB1Q9BRP7 624 aaPredicted RBP4.07□□□□□ -1.76
VPS35-207ENST00000568191 TRPM5Q9NZQ8 1165 aa4.07□□□□□ -1.76
VPS35-207ENST00000568191 APOBEC2Q9Y235 224 aaKnown RBP4.07□□□□□ -1.76
VPS35-207ENST00000568191 PPP2R3BQ9Y5P8 575 aa4.07□□□□□ -1.76
VPS35-207ENST00000568191 DMRT1Q9Y5R6 373 aa4.07□□□□□ -1.76
VPS35-207ENST00000568191 CDY2AQ9Y6F7 541 aa4.07□□□□□ -1.76
VPS35-207ENST00000568191 RPTORQ8N122 1335 aa4.06□□□□□ -1.76
VPS35-207ENST00000568191 FAM83GA6ND36 823 aa4.06□□□□□ -1.76
VPS35-207ENST00000568191 BRINP1O60477 761 aa4.06□□□□□ -1.76
VPS35-207ENST00000568191 CRHR1P34998 444 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms