RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 TAP1Q03518 808 aa21.51■■□□□ 1.03
CLN3-225ENST00000566824 CNNM4Q6P4Q7 775 aa21.51■■□□□ 1.03
CLN3-225ENST00000566824 KRBA2Q6ZNG9 492 aa21.51■■□□□ 1.03
CLN3-225ENST00000566824 FAM43BQ6ZT52 329 aaPredicted RBP21.51■■□□□ 1.03
CLN3-225ENST00000566824 MRPL10Q7Z7H8 261 aaKnown RBP21.51■■□□□ 1.03
CLN3-225ENST00000566824 CEP57L1Q8IYX8 460 aa21.51■■□□□ 1.03
CLN3-225ENST00000566824 ZBTB45Q96K62 511 aaPredicted RBP21.51■■□□□ 1.03
CLN3-225ENST00000566824 ACO2Q99798 780 aaKnown RBP21.51■■□□□ 1.03
CLN3-225ENST00000566824 ELAC1Q9H777 363 aaKnown RBP21.51■■□□□ 1.03
CLN3-225ENST00000566824 MAGEF1Q9HAY2 307 aa21.51■■□□□ 1.03
CLN3-225ENST00000566824 INSL6Q9Y581 213 aa21.51■■□□□ 1.03
CLN3-225ENST00000566824 LINC01553A4QN01 128 aa21.5■■□□□ 1.03
CLN3-225ENST00000566824 GOLGA6L4A6NEF3 574 aa21.5■■□□□ 1.03
CLN3-225ENST00000566824 ZNF623O75123 536 aa21.5■■□□□ 1.03
CLN3-225ENST00000566824 AFF1P51825 1210 aaKnown RBP21.5■■□□□ 1.03
CLN3-225ENST00000566824 COASYQ13057 564 aa21.5■■□□□ 1.03
CLN3-225ENST00000566824 HERC4Q5GLZ8 1057 aaPredicted RBP21.5■■□□□ 1.03
CLN3-225ENST00000566824 ATF7IP2Q5U623 682 aa21.5■■□□□ 1.03
CLN3-225ENST00000566824 SLC27A1Q6PCB7 646 aa21.5■■□□□ 1.03
CLN3-225ENST00000566824 AGMOQ6ZNB7 445 aa21.5■■□□□ 1.03
CLN3-225ENST00000566824 FAM178BQ8IXR5 827 aa21.5■■□□□ 1.03
CLN3-225ENST00000566824 FAM161BQ96MY7 647 aa21.5■■□□□ 1.03
CLN3-225ENST00000566824 PYM1Q9BRP8 204 aaKnown RBP21.5■■□□□ 1.03
CLN3-225ENST00000566824 STRA6Q9BX79 667 aa21.5■■□□□ 1.03
CLN3-225ENST00000566824 NXF3Q9H4D5 531 aaKnown RBP21.5■■□□□ 1.03
CLN3-225ENST00000566824 CERS4Q9HA82 394 aa21.5■■□□□ 1.03
CLN3-225ENST00000566824 IPPQ9Y573 584 aa21.5■■□□□ 1.03
CLN3-225ENST00000566824 TRIP11Q15643 1979 aa21.49■■□□□ 1.03
CLN3-225ENST00000566824 ABLIM1O14639 778 aa21.49■■□□□ 1.03
CLN3-225ENST00000566824 KLRC4O43908 158 aa21.49■■□□□ 1.03
CLN3-225ENST00000566824 LINC00271P0C7V0 271 aa21.49■■□□□ 1.03
CLN3-225ENST00000566824 MYBP10242 640 aa21.49■■□□□ 1.03
CLN3-225ENST00000566824 GAP43P17677 238 aa21.49■■□□□ 1.03
CLN3-225ENST00000566824 NCBP1Q09161 790 aaKnown RBP21.49■■□□□ 1.03
CLN3-225ENST00000566824 KCNA1Q09470 495 aa21.49■■□□□ 1.03
CLN3-225ENST00000566824 ZNF720Q7Z2F6 126 aa21.49■■□□□ 1.03
CLN3-225ENST00000566824 HELQQ8TDG4 1101 aa21.49■■□□□ 1.03
CLN3-225ENST00000566824 CCDC51Q96ER9 411 aa21.49■■□□□ 1.03
CLN3-225ENST00000566824 CASD1Q96PB1 797 aa21.49■■□□□ 1.03
CLN3-225ENST00000566824 HAPLN2Q9GZV7 340 aa21.49■■□□□ 1.03
CLN3-225ENST00000566824 PTPRHQ9HD43 1115 aa21.49■■□□□ 1.03
CLN3-225ENST00000566824 USP25Q9UHP3 1055 aa21.49■■□□□ 1.03
CLN3-225ENST00000566824 TBX20Q9UMR3 447 aa21.49■■□□□ 1.03
CLN3-225ENST00000566824 TBKBP1A7MCY6 615 aa21.48■■□□□ 1.03
CLN3-225ENST00000566824 NR1I2O75469 434 aa21.48■■□□□ 1.03
CLN3-225ENST00000566824 PPP1R37O75864 691 aa21.48■■□□□ 1.03
CLN3-225ENST00000566824 EOMESO95936 686 aa21.48■■□□□ 1.03
CLN3-225ENST00000566824 GTF2BQ00403 316 aa21.48■■□□□ 1.03
CLN3-225ENST00000566824 AMPD3Q01432 767 aa21.48■■□□□ 1.03
CLN3-225ENST00000566824 TMEM132AQ24JP5 1023 aa21.48■■□□□ 1.03
CLN3-225ENST00000566824 PPP2R2DQ66LE6 453 aa21.48■■□□□ 1.03
CLN3-225ENST00000566824 CLEC17AQ6ZS10 378 aa21.48■■□□□ 1.03
CLN3-225ENST00000566824 LRRC55Q6ZSA7 311 aa21.48■■□□□ 1.03
CLN3-225ENST00000566824 CCDC65Q8IXS2 484 aa21.48■■□□□ 1.03
CLN3-225ENST00000566824 KCNN1Q92952 543 aa21.48■■□□□ 1.03
CLN3-225ENST00000566824 APOL6Q9BWW8 343 aa21.48■■□□□ 1.03
CLN3-225ENST00000566824 MRPL4Q9BYD3 311 aaKnown RBP21.48■■□□□ 1.03
CLN3-225ENST00000566824 LRRC27Q9C0I9 530 aa21.48■■□□□ 1.03
CLN3-225ENST00000566824 CXCL16Q9H2A7 254 aa21.48■■□□□ 1.03
CLN3-225ENST00000566824 MRPL44Q9H9J2 332 aaKnown RBP21.48■■□□□ 1.03
CLN3-225ENST00000566824 TNFSF13BQ9Y275 285 aa21.48■■□□□ 1.03
CLN3-225ENST00000566824 MRPL42Q9Y6G3 142 aaKnown RBP21.48■■□□□ 1.03
CLN3-225ENST00000566824 EPOPA6NHQ4 379 aa21.47■■□□□ 1.03
CLN3-225ENST00000566824 TISP43B9A030 160 aa21.47■■□□□ 1.03
CLN3-225ENST00000566824 N4BP3O15049 544 aa21.47■■□□□ 1.03
CLN3-225ENST00000566824 PRPF40AO75400 957 aaKnown RBP21.47■■□□□ 1.03
CLN3-225ENST00000566824 PROZP22891 400 aa21.47■■□□□ 1.03
CLN3-225ENST00000566824 AKAP5P24588 427 aa21.47■■□□□ 1.03
CLN3-225ENST00000566824 RAB27AP51159 221 aa21.47■■□□□ 1.03
CLN3-225ENST00000566824 FAM160A1Q05DH4 1040 aa21.47■■□□□ 1.03
CLN3-225ENST00000566824 EHHADHQ08426 723 aa21.47■■□□□ 1.03
CLN3-225ENST00000566824 SLC39A4Q6P5W5 647 aa21.47■■□□□ 1.03
CLN3-225ENST00000566824 UNC13DQ70J99 1090 aa21.47■■□□□ 1.03
CLN3-225ENST00000566824 ZBTB33Q86T24 672 aa21.47■■□□□ 1.03
CLN3-225ENST00000566824 CEP120Q8N960 986 aa21.47■■□□□ 1.03
CLN3-225ENST00000566824 CNNM3Q8NE01 707 aa21.47■■□□□ 1.03
CLN3-225ENST00000566824 C17orf80Q9BSJ5 609 aa21.47■■□□□ 1.03
CLN3-225ENST00000566824 SEMA6BQ9H3T3 888 aa21.47■■□□□ 1.03
CLN3-225ENST00000566824 ST6GALNAC4Q9H4F1 302 aa21.47■■□□□ 1.03
CLN3-225ENST00000566824 ZNF576Q9H609 170 aa21.47■■□□□ 1.03
CLN3-225ENST00000566824 SLC28A3Q9HAS3 691 aa21.47■■□□□ 1.03
CLN3-225ENST00000566824 SEL1LQ9UBV2 794 aa21.47■■□□□ 1.03
CLN3-225ENST00000566824 ANKRD63C9JTQ0 380 aa21.46■■□□□ 1.03
CLN3-225ENST00000566824 GTPBP6O43824 516 aaPredicted RBP21.46■■□□□ 1.03
CLN3-225ENST00000566824 OFD1O75665 1012 aa21.46■■□□□ 1.03
CLN3-225ENST00000566824 STRN3Q13033 797 aa21.46■■□□□ 1.03
CLN3-225ENST00000566824 BTG3Q14201 252 aaPredicted RBP21.46■■□□□ 1.03
CLN3-225ENST00000566824 CMTR2Q8IYT2 770 aaKnown RBP21.46■■□□□ 1.03
CLN3-225ENST00000566824 CDT1Q9H211 546 aa21.46■■□□□ 1.03
CLN3-225ENST00000566824 OLFML3Q9NRN5 406 aa21.46■■□□□ 1.03
CLN3-225ENST00000566824 KCNG1Q9UIX4 513 aa21.46■■□□□ 1.03
CLN3-225ENST00000566824 MTUS1Q9ULD2 1270 aa21.46■■□□□ 1.03
CLN3-225ENST00000566824 RALGAPA2Q2PPJ7 1873 aa21.46■■□□□ 1.03
CLN3-225ENST00000566824 COL4A4P53420 1690 aaPredicted RBP21.45■■□□□ 1.02
CLN3-225ENST00000566824 TRANK1O15050 2925 aa21.45■■□□□ 1.02
CLN3-225ENST00000566824 RFXAPO00287 272 aa21.45■■□□□ 1.02
CLN3-225ENST00000566824 SKIP12755 728 aa21.45■■□□□ 1.02
CLN3-225ENST00000566824 ITGA4P13612 1032 aa21.45■■□□□ 1.02
CLN3-225ENST00000566824 DPYDQ12882 1025 aa21.45■■□□□ 1.02
CLN3-225ENST00000566824 GRIN2CQ14957 1233 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms