RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 POMCP01189 267 aa16.54■□□□□ 0.24
CLN3-222ENST00000566083 TRAPPC10P48553 1259 aa16.54■□□□□ 0.24
CLN3-222ENST00000566083 CAPSQ13938 189 aa16.54■□□□□ 0.24
CLN3-222ENST00000566083 PTPN14Q15678 1187 aa16.54■□□□□ 0.24
CLN3-222ENST00000566083 KIAA1841Q6NSI8 718 aa16.54■□□□□ 0.24
CLN3-222ENST00000566083 UBALD2Q8IYN6 164 aa16.54■□□□□ 0.24
CLN3-222ENST00000566083 SMG8Q8ND04 991 aaKnown RBP16.54■□□□□ 0.24
CLN3-222ENST00000566083 SLC22A17Q8WUG5 538 aa16.54■□□□□ 0.24
CLN3-222ENST00000566083 POLR3CQ9BUI4 534 aaPredicted RBP16.54■□□□□ 0.24
CLN3-222ENST00000566083 APOL5Q9BWW9 433 aa16.54■□□□□ 0.24
CLN3-222ENST00000566083 SFXN1Q9H9B4 322 aa16.54■□□□□ 0.24
CLN3-222ENST00000566083 SH2B1Q9NRF2 756 aaPredicted RBP16.54■□□□□ 0.24
CLN3-222ENST00000566083 STK24Q9Y6E0 443 aa16.54■□□□□ 0.24
CLN3-222ENST00000566083 C5orf42Q9H799 3197 aa16.54■□□□□ 0.24
CLN3-222ENST00000566083 ARL5CA6NH57 179 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 SPDYE4A6NLX3 237 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 NRP1O14786 923 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 DDHD2O94830 711 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 C1RP00736 705 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 SOD2P04179 222 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 URODP06132 367 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 GLRA2P23416 452 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 KLRC2P26717 231 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 MCM7P33993 719 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 RBM25P49756 843 aaKnown RBP16.53■□□□□ 0.24
CLN3-222ENST00000566083 MBTD1Q05BQ5 628 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 GNL2Q13823 731 aaKnown RBP16.53■□□□□ 0.24
CLN3-222ENST00000566083 HAUS3Q68CZ6 603 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 SLC27A1Q6PCB7 646 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 GPR65Q8IYL9 337 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 PIGOQ8TEQ8 1089 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 COLEC11Q9BWP8 271 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 C2orf40Q9H1Z8 148 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 PRMT7Q9NVM4 692 aaPredicted RBP16.53■□□□□ 0.24
CLN3-222ENST00000566083 A0A1B0GUA9 196 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 POTEMA6NI47 508 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 DTNBO60941 627 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 ADH1AP07327 375 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 OR52Z1P0C646 297 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 ARF4P18085 180 aaPredicted RBP16.53■□□□□ 0.24
CLN3-222ENST00000566083 ATP2B1P20020 1258 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 RPA1P27694 616 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 MTMR3Q13615 1198 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 RARS2Q5T160 578 aaKnown RBP16.53■□□□□ 0.24
CLN3-222ENST00000566083 CYP26C1Q6V0L0 522 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 PPP4R3CPQ6ZMV5 832 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 CATSPER3Q86XQ3 398 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 ZBTB8OSQ8IWT0 167 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 COLGALT2Q8IYK4 626 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 FBXL6Q8N531 539 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 FAM184AQ8NB25 1140 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 ASAP3Q8TDY4 903 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 BCL7CQ8WUZ0 217 aaPredicted RBP16.53■□□□□ 0.24
CLN3-222ENST00000566083 AUTS2Q8WXX7 1259 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 FBXL18Q96ME1 805 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 KLHL5Q96PQ7 755 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 GAD1Q99259 594 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 POLR3FQ9H1D9 316 aaPredicted RBP16.53■□□□□ 0.24
CLN3-222ENST00000566083 POMKQ9H5K3 350 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 TSHZ2Q9NRE2 1034 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 NOL7Q9UMY1 257 aaKnown RBP16.53■□□□□ 0.24
CLN3-222ENST00000566083 SORCS3Q9UPU3 1222 aa16.53■□□□□ 0.24
CLN3-222ENST00000566083 CACNA1HO95180 2353 aa16.52■□□□□ 0.24
CLN3-222ENST00000566083 ARID2Q68CP9 1835 aa16.52■□□□□ 0.24
CLN3-222ENST00000566083 LRRIQ4A6NIV6 560 aa16.52■□□□□ 0.23
CLN3-222ENST00000566083 USO1O60763 962 aaKnown RBP16.52■□□□□ 0.23
CLN3-222ENST00000566083 SPATA31C1P0DKV0 1188 aa16.52■□□□□ 0.23
CLN3-222ENST00000566083 OR1G1P47890 313 aa16.52■□□□□ 0.23
CLN3-222ENST00000566083 NUBP1P53384 320 aa16.52■□□□□ 0.23
CLN3-222ENST00000566083 FOSBP53539 338 aa16.52■□□□□ 0.23
CLN3-222ENST00000566083 DSC1Q08554 894 aa16.52■□□□□ 0.23
CLN3-222ENST00000566083 PPP2R5AQ15172 486 aa16.52■□□□□ 0.23
CLN3-222ENST00000566083 AMHR2Q16671 573 aa16.52■□□□□ 0.23
CLN3-222ENST00000566083 FAM187BQ17R55 369 aa16.52■□□□□ 0.23
CLN3-222ENST00000566083 C15orf39Q6ZRI6 1047 aa16.52■□□□□ 0.23
CLN3-222ENST00000566083 ZDHHC14Q8IZN3 488 aa16.52■□□□□ 0.23
CLN3-222ENST00000566083 TDRD5Q8NAT2 981 aaKnown RBP16.52■□□□□ 0.23
CLN3-222ENST00000566083 FBXO18Q8NFZ0 1043 aa16.52■□□□□ 0.23
CLN3-222ENST00000566083 ACSF2Q96CM8 615 aaPredicted RBP16.52■□□□□ 0.23
CLN3-222ENST00000566083 CPB2Q96IY4 423 aa16.52■□□□□ 0.23
CLN3-222ENST00000566083 HERC2P3Q9BVR0 1158 aa16.52■□□□□ 0.23
CLN3-222ENST00000566083 EIF2AQ9BY44 585 aaKnown RBP16.52■□□□□ 0.23
CLN3-222ENST00000566083 RAB34Q9BZG1 259 aa16.52■□□□□ 0.23
CLN3-222ENST00000566083 IRF2BPLQ9H1B7 796 aa16.52■□□□□ 0.23
CLN3-222ENST00000566083 MYO10Q9HD67 2058 aa16.52■□□□□ 0.23
CLN3-222ENST00000566083 LILRB3O75022 631 aa16.51■□□□□ 0.23
CLN3-222ENST00000566083 CNPP09543 421 aaKnown RBP16.51■□□□□ 0.23
CLN3-222ENST00000566083 EPCAMP16422 314 aa16.51■□□□□ 0.23
CLN3-222ENST00000566083 MLH1P40692 756 aa16.51■□□□□ 0.23
CLN3-222ENST00000566083 CLCN4P51793 760 aa16.51■□□□□ 0.23
CLN3-222ENST00000566083 CREMQ03060 361 aa16.51■□□□□ 0.23
CLN3-222ENST00000566083 OTOP3Q7RTS5 596 aa16.51■□□□□ 0.23
CLN3-222ENST00000566083 GPR149Q86SP6 731 aa16.51■□□□□ 0.23
CLN3-222ENST00000566083 CCDC83Q8IWF9 413 aa16.51■□□□□ 0.23
CLN3-222ENST00000566083 RPS6KC1Q96S38 1066 aa16.51■□□□□ 0.23
CLN3-222ENST00000566083 VN1R3Q9BXE9 311 aa16.51■□□□□ 0.23
CLN3-222ENST00000566083 RHOBTB2Q9BYZ6 727 aa16.51■□□□□ 0.23
CLN3-222ENST00000566083 TMEM60Q9H2L4 133 aa16.51■□□□□ 0.23
CLN3-222ENST00000566083 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.51■□□□□ 0.23
CLN3-222ENST00000566083 PRG3Q9Y2Y8 225 aaPredicted RBP16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms