RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 KRT79Q5XKE5 535 aa22.95■■□□□ 1.26
CLN3-219ENST00000565778 DDX53Q86TM3 631 aaKnown RBP22.95■■□□□ 1.26
CLN3-219ENST00000565778 TMEM173Q86WV6 379 aaPredicted RBP22.95■■□□□ 1.26
CLN3-219ENST00000565778 CDR2LQ86X02 465 aaPredicted RBP22.95■■□□□ 1.26
CLN3-219ENST00000565778 HACE1Q8IYU2 909 aa22.95■■□□□ 1.26
CLN3-219ENST00000565778 VN1R2Q8NFZ6 395 aa22.95■■□□□ 1.26
CLN3-219ENST00000565778 BHMT2Q9H2M3 363 aa22.95■■□□□ 1.26
CLN3-219ENST00000565778 PRMT7Q9NVM4 692 aaPredicted RBP22.95■■□□□ 1.26
CLN3-219ENST00000565778 NCOR1O75376 2440 aa22.94■■□□□ 1.26
CLN3-219ENST00000565778 A0A1B0GUA9 196 aa22.94■■□□□ 1.26
CLN3-219ENST00000565778 C2orf71A6NGG8 1288 aa22.94■■□□□ 1.26
CLN3-219ENST00000565778 PI4K2BG5E9Z4 385 aa22.94■■□□□ 1.26
CLN3-219ENST00000565778 PRPHP41219 470 aa22.94■■□□□ 1.26
CLN3-219ENST00000565778 IL17AQ16552 155 aa22.94■■□□□ 1.26
CLN3-219ENST00000565778 TMEM132AQ24JP5 1023 aa22.94■■□□□ 1.26
CLN3-219ENST00000565778 LARP1BQ659C4 914 aaKnown RBP22.94■■□□□ 1.26
CLN3-219ENST00000565778 SLC27A1Q6PCB7 646 aa22.94■■□□□ 1.26
CLN3-219ENST00000565778 SMRP1Q8NCR6 262 aa22.94■■□□□ 1.26
CLN3-219ENST00000565778 DEPTORQ8TB45 409 aa22.94■■□□□ 1.26
CLN3-219ENST00000565778 GAD1Q99259 594 aa22.94■■□□□ 1.26
CLN3-219ENST00000565778 POP1Q99575 1024 aaKnown RBP22.94■■□□□ 1.26
CLN3-219ENST00000565778 C2orf40Q9H1Z8 148 aa22.94■■□□□ 1.26
CLN3-219ENST00000565778 DNM3Q9UQ16 869 aa22.94■■□□□ 1.26
CLN3-219ENST00000565778 ARL5CA6NH57 179 aa22.93■■□□□ 1.26
CLN3-219ENST00000565778 NPTXRO95502 500 aa22.93■■□□□ 1.26
CLN3-219ENST00000565778 LIG1P18858 919 aa22.93■■□□□ 1.26
CLN3-219ENST00000565778 CDC25AP30304 524 aa22.93■■□□□ 1.26
CLN3-219ENST00000565778 TMEM184AQ6ZMB5 413 aa22.93■■□□□ 1.26
CLN3-219ENST00000565778 BSNDQ8WZ55 320 aa22.93■■□□□ 1.26
CLN3-219ENST00000565778 IFT74Q96LB3 600 aa22.93■■□□□ 1.26
CLN3-219ENST00000565778 TMEM175Q9BSA9 504 aa22.93■■□□□ 1.26
CLN3-219ENST00000565778 FZD8Q9H461 694 aa22.93■■□□□ 1.26
CLN3-219ENST00000565778 GIT1Q9Y2X7 761 aa22.93■■□□□ 1.26
CLN3-219ENST00000565778 USP15Q9Y4E8 981 aaPredicted RBP22.93■■□□□ 1.26
CLN3-219ENST00000565778 C19orf67A6NJJ6 358 aa22.92■■□□□ 1.26
CLN3-219ENST00000565778 PP2D1A8MPX8 630 aa22.92■■□□□ 1.26
CLN3-219ENST00000565778 NRP1O14786 923 aa22.92■■□□□ 1.26
CLN3-219ENST00000565778 B4GALT3O60512 393 aa22.92■■□□□ 1.26
CLN3-219ENST00000565778 AKAP5P24588 427 aa22.92■■□□□ 1.26
CLN3-219ENST00000565778 MLH1P40692 756 aa22.92■■□□□ 1.26
CLN3-219ENST00000565778 NAMPTP43490 491 aa22.92■■□□□ 1.26
CLN3-219ENST00000565778 KCNC3Q14003 757 aa22.92■■□□□ 1.26
CLN3-219ENST00000565778 PPP2R5AQ15172 486 aa22.92■■□□□ 1.26
CLN3-219ENST00000565778 MAPK6Q16659 721 aa22.92■■□□□ 1.26
CLN3-219ENST00000565778 CDCA2Q69YH5 1023 aaPredicted RBP22.92■■□□□ 1.26
CLN3-219ENST00000565778 BCL7CQ8WUZ0 217 aaPredicted RBP22.92■■□□□ 1.26
CLN3-219ENST00000565778 AUTS2Q8WXX7 1259 aa22.92■■□□□ 1.26
CLN3-219ENST00000565778 PRIMPOLQ96LW4 560 aa22.92■■□□□ 1.26
CLN3-219ENST00000565778 ZBP1Q9H171 429 aa22.92■■□□□ 1.26
CLN3-219ENST00000565778 NXF3Q9H4D5 531 aaKnown RBP22.92■■□□□ 1.26
CLN3-219ENST00000565778 MIOSQ9NXC5 875 aa22.92■■□□□ 1.26
CLN3-219ENST00000565778 PARP2Q9UGN5 583 aa22.92■■□□□ 1.26
CLN3-219ENST00000565778 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP22.91■■□□□ 1.26
CLN3-219ENST00000565778 E9PMD0 336 aa22.91■■□□□ 1.26
CLN3-219ENST00000565778 CTSAP10619 480 aa22.91■■□□□ 1.26
CLN3-219ENST00000565778 ALADP13716 330 aa22.91■■□□□ 1.26
CLN3-219ENST00000565778 OR1G1P47890 313 aa22.91■■□□□ 1.26
CLN3-219ENST00000565778 PRPF4BQ13523 1007 aaKnown RBP22.91■■□□□ 1.26
CLN3-219ENST00000565778 GIT2Q14161 759 aa22.91■■□□□ 1.26
CLN3-219ENST00000565778 ZRSR1Q15695 479 aaKnown RBP22.91■■□□□ 1.26
CLN3-219ENST00000565778 FAM187BQ17R55 369 aa22.91■■□□□ 1.26
CLN3-219ENST00000565778 ANKRD54Q6NXT1 300 aa22.91■■□□□ 1.26
CLN3-219ENST00000565778 PPP4R3CPQ6ZMV5 832 aa22.91■■□□□ 1.26
CLN3-219ENST00000565778 KIFAP3Q92845 792 aa22.91■■□□□ 1.26
CLN3-219ENST00000565778 ZFP42Q96MM3 310 aa22.91■■□□□ 1.26
CLN3-219ENST00000565778 APOL5Q9BWW9 433 aa22.91■■□□□ 1.26
CLN3-219ENST00000565778 CLASP2O75122 1294 aaKnown RBP22.9■■□□□ 1.26
CLN3-219ENST00000565778 NR1I2O75469 434 aa22.9■■□□□ 1.26
CLN3-219ENST00000565778 COL9A1P20849 921 aa22.9■■□□□ 1.26
CLN3-219ENST00000565778 SCNN1GP51170 649 aa22.9■■□□□ 1.26
CLN3-219ENST00000565778 COLGALT2Q8IYK4 626 aa22.9■■□□□ 1.26
CLN3-219ENST00000565778 CASP10Q92851 521 aa22.9■■□□□ 1.26
CLN3-219ENST00000565778 KLK14Q9P0G3 267 aa22.9■■□□□ 1.26
CLN3-219ENST00000565778 STK39Q9UEW8 545 aa22.9■■□□□ 1.26
CLN3-219ENST00000565778 PRG3Q9Y2Y8 225 aaPredicted RBP22.9■■□□□ 1.26
CLN3-219ENST00000565778 ACKR2O00590 384 aa22.89■■□□□ 1.25
CLN3-219ENST00000565778 N4BP3O15049 544 aa22.89■■□□□ 1.25
CLN3-219ENST00000565778 SSBP05455 408 aaKnown RBP eCLIP22.89■■□□□ 1.25
CLN3-219ENST00000565778 PRKCBP05771 671 aa22.89■■□□□ 1.25
CLN3-219ENST00000565778 HOXB8P17481 243 aaPredicted RBP22.89■■□□□ 1.25
CLN3-219ENST00000565778 ATP2C1P98194 919 aaPredicted RBP22.89■■□□□ 1.25
CLN3-219ENST00000565778 TMEM31Q5JXX7 168 aa22.89■■□□□ 1.25
CLN3-219ENST00000565778 S1PR5Q9H228 398 aa22.89■■□□□ 1.25
CLN3-219ENST00000565778 USP20Q9Y2K6 914 aa22.89■■□□□ 1.25
CLN3-219ENST00000565778 HCFC2Q9Y5Z7 792 aa22.89■■□□□ 1.25
CLN3-219ENST00000565778 IRAK3Q9Y616 596 aa22.89■■□□□ 1.25
CLN3-219ENST00000565778 VWA3AA6NCI4 1184 aa22.88■■□□□ 1.25
CLN3-219ENST00000565778 TTLL13PA6NNM8 815 aa22.88■■□□□ 1.25
CLN3-219ENST00000565778 INPPL1O15357 1258 aa22.88■■□□□ 1.25
CLN3-219ENST00000565778 EFNA5P52803 228 aa22.88■■□□□ 1.25
CLN3-219ENST00000565778 TPRNQ4KMQ1 711 aa22.88■■□□□ 1.25
CLN3-219ENST00000565778 SYCE2Q6PIF2 218 aa22.88■■□□□ 1.25
CLN3-219ENST00000565778 ADPGKQ9BRR6 497 aa22.88■■□□□ 1.25
CLN3-219ENST00000565778 MMTAG2Q9BU76 263 aaKnown RBP22.88■■□□□ 1.25
CLN3-219ENST00000565778 KIFC3Q9BVG8 833 aa22.88■■□□□ 1.25
CLN3-219ENST00000565778 VN1R3Q9BXE9 311 aa22.88■■□□□ 1.25
CLN3-219ENST00000565778 CCDC169A6NNP5 214 aa22.87■■□□□ 1.25
CLN3-219ENST00000565778 K7ERI5 159 aa22.87■■□□□ 1.25
CLN3-219ENST00000565778 DCXO43602 365 aa22.87■■□□□ 1.25
CLN3-219ENST00000565778 RPGRIP1Q96KN7 1286 aa22.87■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms