RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 LONRF3Q496Y0 759 aa14.76□□□□□ -0.05
CLK3-213ENST00000563842 ATL3Q6DD88 541 aa14.76□□□□□ -0.05
CLK3-213ENST00000563842 AGMOQ6ZNB7 445 aa14.76□□□□□ -0.05
CLK3-213ENST00000563842 KRI1Q8N9T8 703 aaKnown RBP14.76□□□□□ -0.05
CLK3-213ENST00000563842 SMG8Q8ND04 991 aaKnown RBP14.76□□□□□ -0.05
CLK3-213ENST00000563842 EIF2AQ9BY44 585 aaKnown RBP14.76□□□□□ -0.05
CLK3-213ENST00000563842 CCDC113Q9H0I3 377 aa14.76□□□□□ -0.05
CLK3-213ENST00000563842 TMEM134Q9H6X4 195 aa14.76□□□□□ -0.05
CLK3-213ENST00000563842 KMT5AQ9NQR1 393 aa14.76□□□□□ -0.05
CLK3-213ENST00000563842 TLR9Q9NR96 1032 aa14.76□□□□□ -0.05
CLK3-213ENST00000563842 LARSQ9P2J5 1176 aaKnown RBP14.76□□□□□ -0.05
CLK3-213ENST00000563842 FBXO2Q9UK22 296 aaPredicted RBP14.76□□□□□ -0.05
CLK3-213ENST00000563842 ODF2LQ9ULJ1 636 aa14.76□□□□□ -0.05
CLK3-213ENST00000563842 TCF20Q9UGU0 1960 aaKnown RBP14.76□□□□□ -0.05
CLK3-213ENST00000563842 TCHHQ07283 1943 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 FSD2A1L4K1 749 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 NPTXRO95502 500 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 F13A1P00488 732 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 PLS3P13797 630 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 LIG1P18858 919 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 PLCG1P19174 1290 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 SCP2P22307 547 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 HOXD11P31277 338 aaPredicted RBP14.75□□□□□ -0.05
CLK3-213ENST00000563842 NPTX2P47972 431 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 BCAR1P56945 870 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 GRIN1Q05586 938 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 BECN1Q14457 450 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 KARSQ15046 597 aaKnown RBP14.75□□□□□ -0.05
CLK3-213ENST00000563842 DCAF4L1Q3SXM0 396 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 TCEAL5Q5H9L2 206 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 TJAP1Q5JTD0 557 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 DAW1Q8N136 415 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 SPRYD3Q8NCJ5 442 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 MICAL1Q8TDZ2 1067 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 SPIRE2Q8WWL2 714 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 MRPS27Q92552 414 aaKnown RBP14.75□□□□□ -0.05
CLK3-213ENST00000563842 LARP4BQ92615 738 aaKnown RBP14.75□□□□□ -0.05
CLK3-213ENST00000563842 TMEM169Q96HH4 297 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 NTPCRQ9BSD7 190 aaKnown RBP14.75□□□□□ -0.05
CLK3-213ENST00000563842 POLD4Q9HCU8 107 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 TBC1D13Q9NVG8 400 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 HCSTQ9UBK5 93 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 STK17AQ9UEE5 414 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 STK39Q9UEW8 545 aa14.75□□□□□ -0.05
CLK3-213ENST00000563842 NCOR1O75376 2440 aa14.74□□□□□ -0.05
CLK3-213ENST00000563842 MEIS3P2A8K0S8 358 aa14.74□□□□□ -0.05
CLK3-213ENST00000563842 SPTLC2O15270 562 aa14.74□□□□□ -0.05
CLK3-213ENST00000563842 INPPL1O15357 1258 aa14.74□□□□□ -0.05
CLK3-213ENST00000563842 ZC3H11AO75152 810 aaKnown RBP eCLIP14.74□□□□□ -0.05
CLK3-213ENST00000563842 PPP6R2O75170 966 aa14.74□□□□□ -0.05
CLK3-213ENST00000563842 NR1I2O75469 434 aa14.74□□□□□ -0.05
CLK3-213ENST00000563842 YEATS4O95619 227 aa14.74□□□□□ -0.05
CLK3-213ENST00000563842 KRT18P05783 430 aaKnown RBP14.74□□□□□ -0.05
CLK3-213ENST00000563842 DDIT3P35638 169 aa14.74□□□□□ -0.05
CLK3-213ENST00000563842 MAPK7Q13164 816 aa14.74□□□□□ -0.05
CLK3-213ENST00000563842 RRAGBQ5VZM2 374 aa14.74□□□□□ -0.05
CLK3-213ENST00000563842 CCDC73Q6ZRK6 1079 aa14.74□□□□□ -0.05
CLK3-213ENST00000563842 GPBP1Q86WP2 473 aa14.74□□□□□ -0.05
CLK3-213ENST00000563842 SLC39A11Q8N1S5 342 aa14.74□□□□□ -0.05
CLK3-213ENST00000563842 LINC00301Q8NCQ3 95 aa14.74□□□□□ -0.05
CLK3-213ENST00000563842 RAD54LQ92698 747 aa14.74□□□□□ -0.05
CLK3-213ENST00000563842 EPSTI1Q96J88 318 aa14.74□□□□□ -0.05
CLK3-213ENST00000563842 ASB2Q96Q27 587 aa14.74□□□□□ -0.05
CLK3-213ENST00000563842 TMEM175Q9BSA9 504 aa14.74□□□□□ -0.05
CLK3-213ENST00000563842 MRPL4Q9BYD3 311 aaKnown RBP14.74□□□□□ -0.05
CLK3-213ENST00000563842 NRDE2Q9H7Z3 1164 aa14.74□□□□□ -0.05
CLK3-213ENST00000563842 BLOC1S4Q9NUP1 217 aa14.74□□□□□ -0.05
CLK3-213ENST00000563842 ARHGAP28Q9P2N2 729 aa14.74□□□□□ -0.05
CLK3-213ENST00000563842 CFAP45Q9UL16 551 aa14.74□□□□□ -0.05
CLK3-213ENST00000563842 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.73□□□□□ -0.05
CLK3-213ENST00000563842 ALDH2P05091 517 aa14.73□□□□□ -0.05
CLK3-213ENST00000563842 DNAJB1P25685 340 aa14.73□□□□□ -0.05
CLK3-213ENST00000563842 ABCD1P33897 745 aa14.73□□□□□ -0.05
CLK3-213ENST00000563842 RAD51AP2Q09MP3 1159 aa14.73□□□□□ -0.05
CLK3-213ENST00000563842 STRN3Q13033 797 aa14.73□□□□□ -0.05
CLK3-213ENST00000563842 CAMK1Q14012 370 aa14.73□□□□□ -0.05
CLK3-213ENST00000563842 DHX8Q14562 1220 aaKnown RBP14.73□□□□□ -0.05
CLK3-213ENST00000563842 MCM6Q14566 821 aa14.73□□□□□ -0.05
CLK3-213ENST00000563842 ATF7IP2Q5U623 682 aa14.73□□□□□ -0.05
CLK3-213ENST00000563842 FOXD4L5Q5VV16 416 aaPredicted RBP14.73□□□□□ -0.05
CLK3-213ENST00000563842 FOXD4L4Q8WXT5 416 aaPredicted RBP14.73□□□□□ -0.05
CLK3-213ENST00000563842 PABPC5Q96DU9 382 aaKnown RBP14.73□□□□□ -0.05
CLK3-213ENST00000563842 CLIC6Q96NY7 704 aa14.73□□□□□ -0.05
CLK3-213ENST00000563842 RPS6KC1Q96S38 1066 aa14.73□□□□□ -0.05
CLK3-213ENST00000563842 KIFC3Q9BVG8 833 aa14.73□□□□□ -0.05
CLK3-213ENST00000563842 APOL6Q9BWW8 343 aa14.73□□□□□ -0.05
CLK3-213ENST00000563842 GBP3Q9H0R5 595 aa14.73□□□□□ -0.05
CLK3-213ENST00000563842 NXF3Q9H4D5 531 aaKnown RBP14.73□□□□□ -0.05
CLK3-213ENST00000563842 PDZD7Q9H5P4 517 aa14.73□□□□□ -0.05
CLK3-213ENST00000563842 UBE2ZQ9H832 354 aaPredicted RBP14.73□□□□□ -0.05
CLK3-213ENST00000563842 NGRNQ9NPE2 291 aaKnown RBP14.73□□□□□ -0.05
CLK3-213ENST00000563842 PARP2Q9UGN5 583 aa14.73□□□□□ -0.05
CLK3-213ENST00000563842 TNFSF13BQ9Y275 285 aa14.73□□□□□ -0.05
CLK3-213ENST00000563842 HES2Q9Y543 173 aa14.73□□□□□ -0.05
CLK3-213ENST00000563842 REV3LO60673 3130 aa14.72□□□□□ -0.05
CLK3-213ENST00000563842 ARL5CA6NH57 179 aa14.72□□□□□ -0.05
CLK3-213ENST00000563842 SFI1A8K8P3 1242 aa14.72□□□□□ -0.05
CLK3-213ENST00000563842 SLC16A4O15374 487 aa14.72□□□□□ -0.05
CLK3-213ENST00000563842 TBCAO75347 108 aaKnown RBP14.72□□□□□ -0.05
CLK3-213ENST00000563842 FAM13AO94988 1023 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms