RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 DEPTORQ8TB45 409 aa18.64■□□□□ 0.57
CLK3-210ENST00000563112 IFT74Q96LB3 600 aa18.64■□□□□ 0.57
CLK3-210ENST00000563112 BHMT2Q9H2M3 363 aa18.64■□□□□ 0.57
CLK3-210ENST00000563112 EPHX3Q9H6B9 360 aa18.64■□□□□ 0.57
CLK3-210ENST00000563112 DDX19AQ9NUU7 478 aaKnown RBP18.64■□□□□ 0.57
CLK3-210ENST00000563112 DNAJB4Q9UDY4 337 aa18.64■□□□□ 0.57
CLK3-210ENST00000563112 DNM3Q9UQ16 869 aa18.64■□□□□ 0.57
CLK3-210ENST00000563112 FAN1Q9Y2M0 1017 aa18.64■□□□□ 0.57
CLK3-210ENST00000563112 A0A1B0GUA9 196 aa18.63■□□□□ 0.57
CLK3-210ENST00000563112 C2orf71A6NGG8 1288 aa18.63■□□□□ 0.57
CLK3-210ENST00000563112 B4GALT5O43286 388 aa18.63■□□□□ 0.57
CLK3-210ENST00000563112 DDHD2O94830 711 aa18.63■□□□□ 0.57
CLK3-210ENST00000563112 POMCP01189 267 aa18.63■□□□□ 0.57
CLK3-210ENST00000563112 ALADP13716 330 aa18.63■□□□□ 0.57
CLK3-210ENST00000563112 NAMPTP43490 491 aa18.63■□□□□ 0.57
CLK3-210ENST00000563112 LARP1BQ659C4 914 aaKnown RBP18.63■□□□□ 0.57
CLK3-210ENST00000563112 CDCA2Q69YH5 1023 aaPredicted RBP18.63■□□□□ 0.57
CLK3-210ENST00000563112 LLGL2Q6P1M3 1020 aa18.63■□□□□ 0.57
CLK3-210ENST00000563112 TMEM184AQ6ZMB5 413 aa18.63■□□□□ 0.57
CLK3-210ENST00000563112 PPP4R3CPQ6ZMV5 832 aa18.63■□□□□ 0.57
CLK3-210ENST00000563112 KIFAP3Q92845 792 aa18.63■□□□□ 0.57
CLK3-210ENST00000563112 APOL6Q9BWW8 343 aa18.63■□□□□ 0.57
CLK3-210ENST00000563112 GIT1Q9Y2X7 761 aa18.63■□□□□ 0.57
CLK3-210ENST00000563112 ARL5CA6NH57 179 aa18.62■□□□□ 0.57
CLK3-210ENST00000563112 C19orf67A6NJJ6 358 aa18.62■□□□□ 0.57
CLK3-210ENST00000563112 PI4K2BG5E9Z4 385 aa18.62■□□□□ 0.57
CLK3-210ENST00000563112 NR1I2O75469 434 aa18.62■□□□□ 0.57
CLK3-210ENST00000563112 NPTXRO95502 500 aa18.62■□□□□ 0.57
CLK3-210ENST00000563112 AFF1P51825 1210 aaKnown RBP18.62■□□□□ 0.57
CLK3-210ENST00000563112 ECM1Q16610 540 aa18.62■□□□□ 0.57
CLK3-210ENST00000563112 MAPK6Q16659 721 aa18.62■□□□□ 0.57
CLK3-210ENST00000563112 FAM187BQ17R55 369 aa18.62■□□□□ 0.57
CLK3-210ENST00000563112 TMEM173Q86WV6 379 aaPredicted RBP18.62■□□□□ 0.57
CLK3-210ENST00000563112 VN1R2Q8NFZ6 395 aa18.62■□□□□ 0.57
CLK3-210ENST00000563112 CASP10Q92851 521 aa18.62■□□□□ 0.57
CLK3-210ENST00000563112 GAD1Q99259 594 aa18.62■□□□□ 0.57
CLK3-210ENST00000563112 ZBP1Q9H171 429 aa18.62■□□□□ 0.57
CLK3-210ENST00000563112 RNF39Q9H2S5 420 aa18.62■□□□□ 0.57
CLK3-210ENST00000563112 FZD8Q9H461 694 aa18.62■□□□□ 0.57
CLK3-210ENST00000563112 USP15Q9Y4E8 981 aaPredicted RBP18.62■□□□□ 0.57
CLK3-210ENST00000563112 HES2Q9Y543 173 aa18.62■□□□□ 0.57
CLK3-210ENST00000563112 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.61■□□□□ 0.57
CLK3-210ENST00000563112 N4BP3O15049 544 aa18.61■□□□□ 0.57
CLK3-210ENST00000563112 INPPL1O15357 1258 aa18.61■□□□□ 0.57
CLK3-210ENST00000563112 CTSAP10619 480 aa18.61■□□□□ 0.57
CLK3-210ENST00000563112 HOXB8P17481 243 aaPredicted RBP18.61■□□□□ 0.57
CLK3-210ENST00000563112 LIG1P18858 919 aa18.61■□□□□ 0.57
CLK3-210ENST00000563112 MLH1P40692 756 aa18.61■□□□□ 0.57
CLK3-210ENST00000563112 EFNA5P52803 228 aa18.61■□□□□ 0.57
CLK3-210ENST00000563112 RBM10P98175 930 aaKnown RBP18.61■□□□□ 0.57
CLK3-210ENST00000563112 ATP2C1P98194 919 aaPredicted RBP18.61■□□□□ 0.57
CLK3-210ENST00000563112 PRPF4BQ13523 1007 aaKnown RBP18.61■□□□□ 0.57
CLK3-210ENST00000563112 ANKRD54Q6NXT1 300 aa18.61■□□□□ 0.57
CLK3-210ENST00000563112 CDR2LQ86X02 465 aaPredicted RBP18.61■□□□□ 0.57
CLK3-210ENST00000563112 BSNDQ8WZ55 320 aa18.61■□□□□ 0.57
CLK3-210ENST00000563112 KHSRPQ92945 711 aaKnown RBP eCLIP18.61■□□□□ 0.57
CLK3-210ENST00000563112 DAXXQ9UER7 740 aaPredicted RBP18.61■□□□□ 0.57
CLK3-210ENST00000563112 PARP2Q9UGN5 583 aa18.61■□□□□ 0.57
CLK3-210ENST00000563112 IRAK3Q9Y616 596 aa18.61■□□□□ 0.57
CLK3-210ENST00000563112 ACKR2O00590 384 aa18.6■□□□□ 0.57
CLK3-210ENST00000563112 NRP1O14786 923 aa18.6■□□□□ 0.57
CLK3-210ENST00000563112 CLASP2O75122 1294 aaKnown RBP18.6■□□□□ 0.57
CLK3-210ENST00000563112 PRKCBP05771 671 aa18.6■□□□□ 0.57
CLK3-210ENST00000563112 OR1G1P47890 313 aa18.6■□□□□ 0.57
CLK3-210ENST00000563112 SCNN1GP51170 649 aa18.6■□□□□ 0.57
CLK3-210ENST00000563112 KCNC3Q14003 757 aa18.6■□□□□ 0.57
CLK3-210ENST00000563112 TPRNQ4KMQ1 711 aa18.6■□□□□ 0.57
CLK3-210ENST00000563112 TMEM31Q5JXX7 168 aa18.6■□□□□ 0.57
CLK3-210ENST00000563112 BCL7CQ8WUZ0 217 aaPredicted RBP18.6■□□□□ 0.57
CLK3-210ENST00000563112 ADPGKQ9BRR6 497 aa18.6■□□□□ 0.57
CLK3-210ENST00000563112 NXF3Q9H4D5 531 aaKnown RBP18.6■□□□□ 0.57
CLK3-210ENST00000563112 PP2D1A8MPX8 630 aa18.59■□□□□ 0.57
CLK3-210ENST00000563112 E9PMD0 336 aa18.59■□□□□ 0.57
CLK3-210ENST00000563112 B4GALT3O60512 393 aa18.59■□□□□ 0.57
CLK3-210ENST00000563112 AKAP5P24588 427 aa18.59■□□□□ 0.57
CLK3-210ENST00000563112 CDC25AP30304 524 aa18.59■□□□□ 0.57
CLK3-210ENST00000563112 ZRSR1Q15695 479 aaKnown RBP18.59■□□□□ 0.57
CLK3-210ENST00000563112 IL17AQ16552 155 aa18.59■□□□□ 0.57
CLK3-210ENST00000563112 ARL6IP4Q66PJ3 421 aaKnown RBP18.59■□□□□ 0.57
CLK3-210ENST00000563112 COLGALT2Q8IYK4 626 aa18.59■□□□□ 0.57
CLK3-210ENST00000563112 KCTD17Q8N5Z5 321 aa18.59■□□□□ 0.57
CLK3-210ENST00000563112 AUTS2Q8WXX7 1259 aa18.59■□□□□ 0.57
CLK3-210ENST00000563112 ZFP42Q96MM3 310 aa18.59■□□□□ 0.57
CLK3-210ENST00000563112 RPS6KC1Q96S38 1066 aa18.59■□□□□ 0.57
CLK3-210ENST00000563112 NT5C3AQ9H0P0 336 aa18.59■□□□□ 0.57
CLK3-210ENST00000563112 PRG3Q9Y2Y8 225 aaPredicted RBP18.59■□□□□ 0.57
CLK3-210ENST00000563112 HCFC2Q9Y5Z7 792 aa18.59■□□□□ 0.57
CLK3-210ENST00000563112 ZMYM2Q9UBW7 1377 aa18.58■□□□□ 0.57
CLK3-210ENST00000563112 VWA3AA6NCI4 1184 aa18.58■□□□□ 0.56
CLK3-210ENST00000563112 DCXO43602 365 aa18.58■□□□□ 0.56
CLK3-210ENST00000563112 COL9A1P20849 921 aa18.58■□□□□ 0.56
CLK3-210ENST00000563112 CES5AQ6NT32 575 aa18.58■□□□□ 0.56
CLK3-210ENST00000563112 APBB1IPQ7Z5R6 666 aaPredicted RBP18.58■□□□□ 0.56
CLK3-210ENST00000563112 PPFIBP1Q86W92 1011 aa18.58■□□□□ 0.56
CLK3-210ENST00000563112 CDK5RAP3Q96JB5 506 aa18.58■□□□□ 0.56
CLK3-210ENST00000563112 COLEC11Q9BWP8 271 aa18.58■□□□□ 0.56
CLK3-210ENST00000563112 PHF7Q9BWX1 381 aaPredicted RBP18.58■□□□□ 0.56
CLK3-210ENST00000563112 EMILIN2Q9BXX0 1053 aa18.58■□□□□ 0.56
CLK3-210ENST00000563112 PDZD7Q9H5P4 517 aa18.58■□□□□ 0.56
CLK3-210ENST00000563112 POLD4Q9HCU8 107 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms