RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 RCAN3Q9UKA8 241 aa4.51□□□□□ -1.69
VPS35-203ENST00000562420 GPR45Q9Y5Y3 372 aa4.51□□□□□ -1.69
VPS35-203ENST00000562420 IPO13O94829 963 aaKnown RBP4.5□□□□□ -1.69
VPS35-203ENST00000562420 MSX2P35548 267 aaPredicted RBP4.5□□□□□ -1.69
VPS35-203ENST00000562420 WASP42768 502 aa4.5□□□□□ -1.69
VPS35-203ENST00000562420 SRSF2Q01130 221 aaKnown RBP4.5□□□□□ -1.69
VPS35-203ENST00000562420 DUSP2Q05923 314 aa4.5□□□□□ -1.69
VPS35-203ENST00000562420 PRKD1Q15139 912 aaPredicted RBP4.5□□□□□ -1.69
VPS35-203ENST00000562420 UBE3CQ15386 1083 aa4.5□□□□□ -1.69
VPS35-203ENST00000562420 CDSNQ15517 529 aa4.5□□□□□ -1.69
VPS35-203ENST00000562420 MUM1L1Q5H9M0 696 aa4.5□□□□□ -1.69
VPS35-203ENST00000562420 DCAF17Q5H9S7 520 aaPredicted RBP4.5□□□□□ -1.69
VPS35-203ENST00000562420 DOK3Q7L591 496 aa4.5□□□□□ -1.69
VPS35-203ENST00000562420 CMIPQ8IY22 773 aa4.5□□□□□ -1.69
VPS35-203ENST00000562420 AMOTL1Q8IY63 956 aa4.5□□□□□ -1.69
VPS35-203ENST00000562420 MSL3Q8N5Y2 521 aaKnown RBP4.5□□□□□ -1.69
VPS35-203ENST00000562420 C1orf162Q8NEQ5 155 aaPredicted RBP4.5□□□□□ -1.69
VPS35-203ENST00000562420 MIEF2Q96C03 454 aa4.5□□□□□ -1.69
VPS35-203ENST00000562420 ACE2Q9BYF1 805 aaPredicted RBP4.5□□□□□ -1.69
VPS35-203ENST00000562420 QRSL1Q9H0R6 528 aaKnown RBP4.5□□□□□ -1.69
VPS35-203ENST00000562420 RBM12Q9NTZ6 932 aaKnown RBP4.5□□□□□ -1.69
VPS35-203ENST00000562420 DNAJC28Q9NX36 388 aa4.5□□□□□ -1.69
VPS35-203ENST00000562420 ING3Q9NXR8 418 aa4.5□□□□□ -1.69
VPS35-203ENST00000562420 TRHDEQ9UKU6 1024 aa4.5□□□□□ -1.69
VPS35-203ENST00000562420 MYRFQ9Y2G1 1151 aa4.5□□□□□ -1.69
VPS35-203ENST00000562420 WASHC2CQ9Y4E1 1318 aa4.49□□□□□ -1.69
VPS35-203ENST00000562420 SHTN1A0MZ66 631 aa4.49□□□□□ -1.69
VPS35-203ENST00000562420 KRTAP23-1A1A580 65 aa4.49□□□□□ -1.69
VPS35-203ENST00000562420 UBE2QL1A1L167 161 aa4.49□□□□□ -1.69
VPS35-203ENST00000562420 GABRDO14764 452 aa4.49□□□□□ -1.69
VPS35-203ENST00000562420 ACO1P21399 889 aaKnown RBP4.49□□□□□ -1.69
VPS35-203ENST00000562420 ACRV1P26436 265 aa4.49□□□□□ -1.69
VPS35-203ENST00000562420 GZMKP49863 264 aa4.49□□□□□ -1.69
VPS35-203ENST00000562420 MGAT2Q10469 447 aa4.49□□□□□ -1.69
VPS35-203ENST00000562420 ZXDCQ2QGD7 858 aaPredicted RBP4.49□□□□□ -1.69
VPS35-203ENST00000562420 TOR2AQ5JU69 321 aa4.49□□□□□ -1.69
VPS35-203ENST00000562420 FKBP15Q5T1M5 1219 aa4.49□□□□□ -1.69
VPS35-203ENST00000562420 NAIF1Q69YI7 327 aaPredicted RBP4.49□□□□□ -1.69
VPS35-203ENST00000562420 PDZD4Q76G19 769 aaPredicted RBP4.49□□□□□ -1.69
VPS35-203ENST00000562420 D2HGDHQ8N465 521 aa4.49□□□□□ -1.69
VPS35-203ENST00000562420 GPR156Q8NFN8 814 aa4.49□□□□□ -1.69
VPS35-203ENST00000562420 TGFBRAP1Q8WUH2 860 aa4.49□□□□□ -1.69
VPS35-203ENST00000562420 HOXB13Q92826 284 aaPredicted RBP4.49□□□□□ -1.69
VPS35-203ENST00000562420 IL17RAQ96F46 866 aa4.49□□□□□ -1.69
VPS35-203ENST00000562420 BCO1Q9HAY6 547 aa4.49□□□□□ -1.69
VPS35-203ENST00000562420 HOMER2Q9NSB8 354 aa4.49□□□□□ -1.69
VPS35-203ENST00000562420 BCCIPQ9P287 314 aaKnown RBP eCLIP4.49□□□□□ -1.69
VPS35-203ENST00000562420 HECAQ9UBI9 543 aaPredicted RBP4.49□□□□□ -1.69
VPS35-203ENST00000562420 EDARQ9UNE0 448 aa4.49□□□□□ -1.69
VPS35-203ENST00000562420 CLCA2Q9UQC9 943 aa4.49□□□□□ -1.69
VPS35-203ENST00000562420 SH3BP1Q9Y3L3 701 aa4.49□□□□□ -1.69
VPS35-203ENST00000562420 hCG_2014768A0A024R1R8 64 aa4.48□□□□□ -1.69
VPS35-203ENST00000562420 LOC105371045A0A1W2PR82 267 aa4.48□□□□□ -1.69
VPS35-203ENST00000562420 FAM171A2A8MVW0 826 aa4.48□□□□□ -1.69
VPS35-203ENST00000562420 FZD9O00144 591 aa4.48□□□□□ -1.69
VPS35-203ENST00000562420 PRAMEF4O60810 478 aa4.48□□□□□ -1.69
VPS35-203ENST00000562420 INSRRP14616 1297 aa4.48□□□□□ -1.69
VPS35-203ENST00000562420 MCAMP43121 646 aa4.48□□□□□ -1.69
VPS35-203ENST00000562420 EXOSC10Q01780 885 aaKnown RBP4.48□□□□□ -1.69
VPS35-203ENST00000562420 KRTAP1-1Q07627 177 aa4.48□□□□□ -1.69
VPS35-203ENST00000562420 MRPL49Q13405 166 aaKnown RBP4.48□□□□□ -1.69
VPS35-203ENST00000562420 RPUSD2Q8IZ73 545 aaKnown RBP4.48□□□□□ -1.69
VPS35-203ENST00000562420 LILRA3Q8N6C8 439 aaPredicted RBP4.48□□□□□ -1.69
VPS35-203ENST00000562420 MDGA1Q8NFP4 955 aa4.48□□□□□ -1.69
VPS35-203ENST00000562420 RIN2Q8WYP3 895 aaPredicted RBP4.48□□□□□ -1.69
VPS35-203ENST00000562420 ARL8AQ96BM9 186 aa4.48□□□□□ -1.69
VPS35-203ENST00000562420 ZNF512Q96ME7 567 aaPredicted RBP4.48□□□□□ -1.69
VPS35-203ENST00000562420 PUS7Q96PZ0 661 aaKnown RBP4.48□□□□□ -1.69
VPS35-203ENST00000562420 ADOQ96SZ5 270 aa4.48□□□□□ -1.69
VPS35-203ENST00000562420 ASPSCR1Q9BZE9 553 aa4.48□□□□□ -1.69
VPS35-203ENST00000562420 TLR9Q9NR96 1032 aa4.48□□□□□ -1.69
VPS35-203ENST00000562420 GPRC5DQ9NZD1 345 aa4.48□□□□□ -1.69
VPS35-203ENST00000562420 TRPS1Q9UHF7 1281 aa4.48□□□□□ -1.69
VPS35-203ENST00000562420 ZBTB21Q9ULJ3 1066 aa4.48□□□□□ -1.69
VPS35-203ENST00000562420 GIT1Q9Y2X7 761 aa4.48□□□□□ -1.69
VPS35-203ENST00000562420 B5MCH6 92 aa4.47□□□□□ -1.69
VPS35-203ENST00000562420 HOXA3O43365 443 aaPredicted RBP4.47□□□□□ -1.69
VPS35-203ENST00000562420 MFAP3LO75121 409 aa4.47□□□□□ -1.69
VPS35-203ENST00000562420 ENDOD1O94919 500 aa4.47□□□□□ -1.69
VPS35-203ENST00000562420 ECHS1P30084 290 aa4.47□□□□□ -1.69
VPS35-203ENST00000562420 IARSP41252 1262 aaKnown RBP4.47□□□□□ -1.69
VPS35-203ENST00000562420 ANAPC15P60006 121 aa4.47□□□□□ -1.69
VPS35-203ENST00000562420 CDK17Q00537 523 aa4.47□□□□□ -1.69
VPS35-203ENST00000562420 ITKQ08881 620 aa4.47□□□□□ -1.69
VPS35-203ENST00000562420 PUM1Q14671 1186 aaKnown RBP eCLIP4.47□□□□□ -1.69
VPS35-203ENST00000562420 ELAVL1Q15717 326 aaKnown RBP4.47□□□□□ -1.69
VPS35-203ENST00000562420 ZNF585AQ6P3V2 769 aa4.47□□□□□ -1.69
VPS35-203ENST00000562420 ABHD15Q6UXT9 468 aa4.47□□□□□ -1.69
VPS35-203ENST00000562420 THEMISQ8N1K5 641 aaPredicted RBP4.47□□□□□ -1.69
VPS35-203ENST00000562420 ZNF808Q8N4W9 903 aaPredicted RBP4.47□□□□□ -1.69
VPS35-203ENST00000562420 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.47□□□□□ -1.69
VPS35-203ENST00000562420 OR7D4Q8NG98 312 aa4.47□□□□□ -1.69
VPS35-203ENST00000562420 MTMR8Q96EF0 704 aa4.47□□□□□ -1.69
VPS35-203ENST00000562420 FAXDC2Q96IV6 333 aa4.47□□□□□ -1.69
VPS35-203ENST00000562420 ZNF703Q9H7S9 590 aaPredicted RBP4.47□□□□□ -1.69
VPS35-203ENST00000562420 MRFAP1Q9Y605 127 aa4.47□□□□□ -1.69
VPS35-203ENST00000562420 CAPN14A8MX76 684 aa4.46□□□□□ -1.7
VPS35-203ENST00000562420 PJA2O43164 708 aa4.46□□□□□ -1.7
VPS35-203ENST00000562420 KATNA1O75449 491 aa4.46□□□□□ -1.7
VPS35-203ENST00000562420 ITGA10O75578 1167 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms