RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 RASAL3Q86YV0 1011 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 SAMD3Q8N6K7 520 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 HAS1Q92839 578 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 ZBTB45Q96K62 511 aaPredicted RBP9.94□□□□□ -0.82
VPS39-205ENST00000562258 TIMM13Q9Y5L4 95 aaPredicted RBP9.94□□□□□ -0.82
VPS39-205ENST00000562258 SNHG28P0DPA3 235 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 IGFBP4P22692 258 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 DPYDQ12882 1025 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 ORC1Q13415 861 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 ERICH1Q86X53 443 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 ADAM2Q99965 735 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 C11orf70Q9BRQ4 267 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 ARHGAP39Q9C0H5 1083 aa9.94□□□□□ -0.82
VPS39-205ENST00000562258 DDX41Q9UJV9 622 aaKnown RBP9.94□□□□□ -0.82
VPS39-205ENST00000562258 ZMYND8Q9ULU4 1186 aaPredicted RBP9.94□□□□□ -0.82
VPS39-205ENST00000562258 SMIM23A6NLE4 172 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 PRRG1O14668 218 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 ARL1P40616 181 aaPredicted RBP9.93□□□□□ -0.82
VPS39-205ENST00000562258 EHHADHQ08426 723 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 FUT2Q10981 343 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 ITGB3BPQ13352 177 aaPredicted RBP9.93□□□□□ -0.82
VPS39-205ENST00000562258 GIT2Q14161 759 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 EPC2Q52LR7 807 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 CFAP58Q5T655 872 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 PPP1R21Q6ZMI0 780 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 FBXL16Q8N461 479 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 UBL4BQ8N7F7 174 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 CALN1Q9BXU9 219 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 FAM204AQ9H8W3 233 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 EVI5O60447 810 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 MOCS2O96007 188 aaPredicted RBP9.93□□□□□ -0.82
VPS39-205ENST00000562258 GBP2P32456 591 aaPredicted RBP9.93□□□□□ -0.82
VPS39-205ENST00000562258 PPARDQ03181 441 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 BTG3Q14201 252 aaPredicted RBP9.93□□□□□ -0.82
VPS39-205ENST00000562258 DRAP1Q14919 205 aaPredicted RBP9.93□□□□□ -0.82
VPS39-205ENST00000562258 KCNA10Q16322 511 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 DNAJC24Q6P3W2 148 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 TTC30AQ86WT1 665 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 ZNF296Q8WUU4 475 aaPredicted RBP9.93□□□□□ -0.82
VPS39-205ENST00000562258 SLC5A5Q92911 643 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 GCNAQ96QF7 691 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 SEPT10Q9P0V9 454 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 FNDC3AQ9Y2H6 1198 aaKnown RBP9.93□□□□□ -0.82
VPS39-205ENST00000562258 ATRNL1Q5VV63 1379 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 KCNK3O14649 394 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 ITGB3P05106 788 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 RGS7P49802 495 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 ITGA7Q13683 1181 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 MGAT5BQ3V5L5 792 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 DUSP28Q4G0W2 176 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 TAF2Q6P1X5 1199 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 ZNF365Q70YC5 407 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.93□□□□□ -0.82
VPS39-205ENST00000562258 RYBPQ8N488 228 aaPredicted RBP9.93□□□□□ -0.82
VPS39-205ENST00000562258 SEPT5Q99719 369 aaPredicted RBP9.93□□□□□ -0.82
VPS39-205ENST00000562258 SNTG2Q9NY99 539 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 RASAL2Q9UJF2 1139 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 RP1L1Q8IWN7 2480 aaPredicted RBP9.93□□□□□ -0.82
VPS39-205ENST00000562258 KPNA6O60684 536 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 DYNLT1P63172 113 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 PPP6R3Q5H9R7 873 aaPredicted RBP9.93□□□□□ -0.82
VPS39-205ENST00000562258 ADSSL1Q8N142 457 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 CEP63Q96MT8 703 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 ZIC5Q96T25 663 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 UBIAD1Q9Y5Z9 338 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 IKBKGQ9Y6K9 419 aa9.93□□□□□ -0.82
VPS39-205ENST00000562258 SRCAPQ6ZRS2 3230 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 TLDC2A0PJX2 215 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 TBKBP1A7MCY6 615 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 TISP43B9A030 160 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 M0QYV0 167 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 RHOBTB3O94955 611 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 RBP5P82980 135 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 KCNB1Q14721 858 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 ALKBH5Q6P6C2 394 aaKnown RBP9.92□□□□□ -0.82
VPS39-205ENST00000562258 OTOP2Q7RTS6 562 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 NSMCE1Q8WV22 266 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 ADAM22Q9P0K1 906 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 IMPACTQ9P2X3 320 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 SRRDQ9UH36 339 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 AMFRQ9UKV5 643 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 DPYSL4O14531 572 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 ENC1O14682 589 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 TOM1L1O75674 476 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 SMIM10L2AP0DMW4 78 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 SMIM10L2BP0DMW5 78 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 CXCL8P10145 99 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 NUMBP49757 651 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 HADHQ16836 314 aaKnown RBP9.92□□□□□ -0.82
VPS39-205ENST00000562258 MAATS1Q7Z4T9 603 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 NECAB2Q7Z6G3 386 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 ACRBPQ8NEB7 543 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 PNMA5Q96PV4 448 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 SIK2Q9H0K1 926 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 BCAS3Q9H6U6 928 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 AGPAT3Q9NRZ7 376 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 GABRQQ9UN88 632 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 IGKV6D-41A0A0C4DH26 115 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 CYP26A1O43174 497 aa9.92□□□□□ -0.82
VPS39-205ENST00000562258 MED7O43513 233 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms